RNA id: AMCG00007923


Basic Information

Item Value
RNA id AMCG00007923
length 4897
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00007923
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37203870 ~ 37216558 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAAACGACCCGAGCAGAGATCAGTGGAGAAGAGCAGCACCCAGTCCCAGCTGGCGTGGCCTGAGCGGCAGGGTGTGAGCGGTGCTGGATGACACAGGGATGGTGAACGAGACGCCACTGCCCTGGGAGCCGGGGACGGAAGACACCCAGGTGCGGGTGAACGTGGGCGGGCTGAAGAGGAGCTTGTGCTGCAGCACACTGCGCCGCTTCCCCGACACACGACTGGGCCGCCTGCTGGCCTGCGACTCAGAGGAGTCCATCCTGCAGGTGTGCGACGACTATGACCAGCAGGAGGGCGAGTTCTACTTCGACCGCAACCCGGGGCTGTTCCCCTATGTGCTGCACTTCTACCAGACAGGCAAGCTGCACATCATGGAGGAGCTGTGCGTTTTCTCCTTCTGCCAGGAGATTGAGTACTGGGGCATCAACGAGTTCTTCCTGGACAGCTGTTGCAGCTACCGGTACCATGACCGCAAGCTAGAGAGCCGGCACAAGAGCTGGGACGAGGAGAGCGACGTGAGCAGCGTGGACACCTCCGTGGATGAGATCTCTGACCTCAACAAGGACATCCAGCACTTCCAGGATGTGCGGTGCGGTGGCGTGCGGAGGCGGCTGTGGCTAACGCTGGAGAACCCCGGCTACTCCATCCCCAGCAAGTTGTTCAGCTTCGTGTCCATCAGCGTGGTGCTCAGCTCCATCGCCATCATGTGCATCAACAGCATCCCCGAGTACCAGCATCTCGACGAGGAGGGCAAGCCCATCGAGGAGCCCACCATGCAGGCGCTCGAGTATTTCTGCATCTGCTGGTTCACCTTCGAGGTGCTAGCACGCCTGCTGCTGGCACCCAACACCCGCAAGTTCTTCCTGCACCCGCTCAACATGATCGACATTGTGTCAGTGCTGCCCATCTACATCACGCTGCTGTTCGACCTGGCGGCGGGTGGCGAGTCCGAGCTCGGTAACATCGGCAAGCTGGTGCAGGTGTTCCGACTGATGCGGATCTTCCGGGTCCTGAAACTGGCCCGCCACTCCACCGGGTTGCGCTCCCTCGGGGCCACGCTGAGGCACAGTTACCGGGAGGTGGGCATCCTGCTGCTGTACCTGGCGGTGGGTGTGTCGGTGTTCTCGGGGATGGCCTACACTGCGGAGTACGAGGAGGATGTGGGGCTGGATACCATCCCGGCCTGCTGGTGGTGGGGCACTGTGAGCATGACCACGGTGGGCTATGGGGACGTGGTGCCGGTCACTGTCGCCGGCAAGCTGGCTGCCTCGGGCTGCATCCTGGGGGGCATCCTGGTGGTGGCTCTGCCCATCACCATCATCTTCAACAAGTTCTCGCACTTCTACCGCAAGCAGAAGGCGCTGGAGGCCTCCGTCCGTGACAGCAACAAGAAGAGCGCGGCCGCGGCAGAGAAAGCAGCAGACAGCTCCGAGGGGGACAGCCAGTGTCTGGGAGAGCTGGAGTCCGagctgggggaggaggaggagggacagGAGACGGCCTACAGCATCAGCAGCATCGAGGTGCTGCCTCCACCCTGGGAGAGGAGCAGCCCAGTGGTCAGGAGAAAGGAGCTCCCCAATCTGTAGCCTATCGCGGTGATCGCCCAGAGCCCTCCTTGGGAAGCCCAAGCAGCCCGCCTCTGGCACAGAGAACCTGCAGGCTGTGGGACACAACACCCGAGTACTCGAAACAGGGCACAACATAGCAGCCTCTTGCAGGAGCAATCCTGACTCCTGTATTGGCTCGCTAGGTCTGGGCTTGCTCCTTTTAAATCGTCCAGGCTCTGCCTCAGGGTTGGGTATGTACCTGTTGGTGCATGAGAAGTTATTGGTGTTGCTGGGCAGAAGACTTAAAGACAAACATGCAAAACCTCGAGATTTCAAATACCTTGTGAACACATCGGAGAGTTTGAGACTCCTAATGCGTGGTGTCCAAACTGCAGTGTGCACAGACTCTGCTGTAGCTCCGGGACAGAAGAATGCTTAGTATATATTCCTGGGAGTGTGCAACAcaagacaagaaaaaataaaagaggaagACACTGGGAGCAAGTGAAGGACATTCAGACCACTGGGACTCATTTGCACCATCTTTTAAAATTTGATcacacagaagaaagaaaatacatctgaCAAGCAACAGAAAAGCCTCCTTATCCCGTGTTAGGTTCTTGAGCACTTTGAGAGTCACGGGCGTCTGTGTGGTGCAGGAACACGTGTAGCAGTTCAGAGCTCTGGCCCTGCCCAATTCCAGTGTTGTTTCCACCTAGACAGGAGCCTCTATCCCCCTGTCCTGGAGCTCAGCCACAGCCCCAGCGttcctttttaattacattcaatttttacGGGAACTGAGGGAATTTGCCCAGACACCTCAAACTGCAACCCCCCCTTTACTTTTATAATCATTCCATAAAAAAGTTCAAAGACACAAGCCAGAGATAACTCACTGTGATCTGTTTGTTTAGTAttggggaacaaaaaaaaacctaataaCAGCCAGGCATGCAAAACAGATTTTAGAGCTTTGTTCCTTCACTCTAAAAGCCTTGTGTTCACCCATCGAGGACGACACGCTGTCTTCCTGCGATGATGGGAGTTAAATTTTTTATCGCTTTCGCAGCCCAAGGGCTACAGATGCTCACGAGGGGTAATTTTATGAATGCTGAAGGCTTCCTATGCACAGCAGGTCTTAAGTCACTTAGTGCTTCCATTCGCTACTGTGCTGCACTGCCAGTCTGATTGCAGACCCGCAGGCCGCCAGCGCCAAATCTGCTTCCAAGTTCTCCCCTTCTCCTTCCCTTCCTCAGCCCCACCCCCCAATCCATCCCTTGTACAATGCTGTCCCCCTCTCCTTTCCCTCCACAGCCCACTCCTTCTCTCCTGCCCAAGCATGTGAGCGCACCTCTGAGTAATTGTGGAACTCTGCTCTTATAAGGCTGCACCATCTCCTCCAACGTCTCACCATCATTGCCTCACTGTCCCATTCAAGCACATCCCAGACGTCACTTGTGACCAGTGTAAACATAGCAGCCTGAAGTGACGTGATGAAGCAAGAGCAGCTCTGGACAGGAGCACAGAGGAAATACAGGCATTGCTGCCATCTTTGCTCAGCAACAACCCACCCACTACAGTGCCTTACACATACTTGGAAAGCAGATAATTTGATCCCACTTTACAAAACTGGCCACAAATCCCTAATTAACTAATGTGTGAACGCCACACGGGGGATAGCCCTTGAATATCTGCATGTACCCCGTCTGTAACACGAACCCCTACCCCTGACCCTCCACCCTCCACCCTGCACCATAACTGTTACACATGTGATCACTATCAGAGCTCAGATGAAGTGTTGGAGGTATTTGTGTGTTATTCCTGCAGAGCCCATACATTCAATCATCAGGAATTTGAAGCCATTATTGTGAAGCCTGGCCAACAGTTTGTCACATGAGTAAAACTAGGTTGCACCACTCCCTGCTGTAGTTAATGGAGCCCTTActctacagtagctcatcttaCCAGCCTGCTAGTGCAGCATCGTGAGCAGCAGATGGATGCGATTCCCTCCCCCGGAGCCTCCCCCTGCTGTAATGCAGTATTGTAAAGCACACACTCTTTCTTCGGTGCTGCTGTTCATTTGCTTTTGTCTCACGGAGTGAATCAAAGCACCCGTACACCACTGGAGCAGAACAAACGGTAGCGTGCTCGAAGGGGAGGTCATCAGGGTTAAGGGGCTTCAGGAGTGTGTGGGATTTgataagtttgtttttaataagatcCTGAGTATGCTATACCCCTCAGtcacactgagagagagtgtgtaatGTCTCACTGCATAGGACTGTATCAGGCTTCAAGGCCTTCAGACTGTGACAGTGCTGGGCATCAGTGTGGACACTGCGGGGGCCGGTGGTGAGTAAGGGAGCTCCAGTCAGGGCTGCCGGTGTGACACGGCACAGGGGAGAGTGCCTGGGAGAAACTGTGCGCACTGCTCTCGGAGCTCCCTGCCCACTAATTGAATGAAATCACTTCTCCTCCGCTCCTCTAATGAGACCGACTGGAGACGGGAGGAATTCCCACAGCTGGCACCATGGCACAGCTCCTGCCAGCCAAACTCGGAATCCCACTCCTCGGGGGGGGTCGGGCGGGACACAGCTGGAGCCTTCACCCACATTCCACTCCCTGATCATGAAGACTGTATGGAAAGGATGACTGTAATACTCAGTTCTGGAcaccttttgttttaaatcaaaatagacTACAGAGCTGGTGTGACATGAGAGGCTGTGCAGAGCCTTATCTCCGCATCGCCATGGAGCGAACTTAAACCTGGCAGAGCCTCCAAGGGCCGTTTAACAGACATCGAGCCCTCTGTCTCTCCAATAAGCAGGGAGCACGAGCAGCTCTAACTGAGAGCCATGATCTGCCTCTGCCTGCTCCTGTACAGTGCACTTGTGAATTAAGTCTCCCCCAAGAACAACTGGGACAGGACACTACCCCTTCCACCCCCTCACCCTCACACCGAAGCCCACCCTGAACCCTCTCCCCACGCAACACAGCTTCCAGCCTTCTGTTCCTGCGCTTTAAAAGCTTGTCAAGTCTTCCAGCTACTCCCCCTGACAGAGCTCTGTGGAGAGGGGAGCCCCGCCACCCCCGCATGGTCAACACGCAGACGgcgttttcattcatttattgcattttcaaaattagCCAGGGGGAGGTCTTCAGTGCTTCTTTCTGGAAAACATACCACGAACCAAAGAGTCTCGGGGAGCCGCAGACAGGTGACATTTACAGCAGAGCGATGACTGTAAACCTGTACAGATAATCACGATAATGAAAGGACAGCCCAGGCACAGGCTTATTTATGGGATGCTGTGAGGTGgtagtgg

Function

GO: NA

KEGG:

id description
K04931 KCNS1, KV9.1; potassium voltage-gated channel delayed-rectifier subfamily S member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34204 lncRNA upstream 111417 37092649 ~ 37093330 (+) True G27334
TU34164 lncRNA upstream 248293 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 359223 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 436808 36767653 ~ 36767939 (+) True G27253
TU34069 lncRNA upstream 477630 36685310 ~ 36727117 (+) True G27216
TU34287 lncRNA downstream 278601 37495159 ~ 37499385 (+) True G27400
TU34351 lncRNA downstream 560507 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 800310 38016868 ~ 38017144 (+) True G27489
TU34393 lncRNA downstream 810822 38027380 ~ 38027923 (+) True G27497
TU34464 lncRNA downstream 1223016 38439574 ~ 38439892 (+) True G27552
AMCG00007925 mRNA upstream 4923 37191982 ~ 37199824 (+) True AMCG00007925
AMCG00007930 mRNA upstream 33645 37168866 ~ 37171102 (+) True AMCG00007930
AMCG00007922 mRNA upstream 68531 37135667 ~ 37136216 (+) True AMCG00007922
AMCG00007919 mRNA upstream 87551 37113631 ~ 37117196 (+) True AMCG00007919
AMCG00007921 mRNA upstream 105892 37097926 ~ 37098855 (+) True AMCG00007921
AMCG00007924 mRNA downstream 27709 37244267 ~ 37246807 (+) True AMCG00007924
AMCG00007931 mRNA downstream 120013 37336571 ~ 37346115 (+) True AMCG00007931
AMCG00007934 mRNA downstream 253365 37469923 ~ 37481171 (+) True AMCG00007934
AMCG00007938 mRNA downstream 278640 37495198 ~ 37496202 (+) True AMCG00007938
AMCG00007940 mRNA downstream 279659 37496217 ~ 37501731 (+) True AMCG00007940
TU33841 other upstream 1583946 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7429712 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8200974 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 8750040 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9110006 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 928426 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 952012 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 1139371 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 1215487 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1476181 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile