RNA id: AMCG00007928


Basic Information

Item Value
RNA id AMCG00007928
length 2437
RNA type mRNA
GC content 0.54
exon number 16
gene id AMCG00007928
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37248379 ~ 37259255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacaacctGGACGTGAAGCGCTAGTGACTTGTCTGACCGCTGAAACCGGTAAGTCGTTTTGAAGTCGGTTTACAGGTTTTGCGGCCTTGATTTTTACATGCTTTGAGCTCGTTGAACTGCGGACGACAACGGAGTGAGCGGACAGTGATTTTGGTTATTTTCTCCGGCTCGTATTTTTGTCGTGGATACACATTTGAGCACGCGATGAACAGCAGTGGCCCAGCATACCCCCTGGCCTCCCTGTACGTGGGGGACCTGCACCCTGATGTCACGGAGGCTATGCTATACCAGAAGTTTTCCCCCGCCGGCCCCATCATGTCCATCCGTGTGTGTCGTGACATAATCACCCGCCGATCCCTCGGATACGCCTACATCAACTTCCAGCAGCCTGCTGACGCGGAGTGCGCGCTCGATACAATGAATTACGAGGTCATCAAGGGCCGGCCCATCAGGATCATGTGGTCCCAGCGCGACCCGGGGCTGCGCAAGTCCGGCGTGGGCAACATCTTCATCAAGAACATGGACGAGTCAATCGATAACAAGGCTCTGTATGACACCTTCTCTGCCTTTGGCAACATCCTGTCCTGCAAGGTGGTGTGTGATGAGAACGGCTCTAAAGGCTATGGGTTTGTTCACtttgagacccaggaggctgcCAACCGAGCTATTGAGACCATGAATGGGATGCTGCTCAATGATCGCAAAGTCTTTGTTGGCCATTTCAAATCTCGAAAGGAGAGGGAGGCGGAGTTCGGGGCGAAGGCGATGGAATTCACCAACGTGTACATCAAGAACTTTGGGGAGGACTTTGATGACGAGAAACTCAGGGAGATGTTTTCAGAGTACGGGAAGACGCTCAGTGTGCGGGTGATGGTGGACGAGCGAGGCCGGTCTCGGGGCTTCGGTTTTGTGAACTACGAGAACCATGAAGATGCACAGAAGGCTGTGGAGGCAATGAACGGGAAGGAGCTGGCCGGGCGGGTGCTCTATGTGGGCCGGGCTCAGAAGCGCATGGAGCGGCAGGGGGAGCTGAAGCGCAAATTTGAACAGATCAAGCAGGAGAGGATCCACCGCTACCAGGGCGTCAACCTGTATGTGAAGAACCTGGATGATGGGATTGACGATGAGAGGCTGAGGAAGGAGTTCATGCCATACGGCACCATCACCAGCGCCAAGGTGATGACCGATGGCAACAAGAGCAAGGGCTTCGGCTTCGTGTGCTTCTCGTCGCCTGAGGAGGCCACCAAGGCGGTGACTGAGATGAACGGCCGCATTGTGAGCACCAAGCCGCTGTACGTGGCACTGGCACAGAGGAAGGAGGAACGTAAGGCCATCCTCACCAACCAGTACATGCAGCGGCTGGCCAGCGTCCGTGCCATGCCCCCTCCCATCATCGGCTCCTACCAGCAGTCCTCGGGTTACTTCATGCCTGCAGCCCAGAGCCGCTCTTTCTATGCCCCCAACACAGTGACCCCGATCCGTGCATCCCCCCGCTGGACCACCCAGCCGCCCAGACCACAGGCGCCATACCAGGCCCAGCTGATCAGACCCGCCATGCCGCGCCGTCCCTCCACTCCCATCAGCACCATGAGGCAGGCCTCCACACAGGCCCCGCGGGTCCTGACCAGTACTCAAAGGATGGCCAACATCGGCACCCAGACAGCGGGCGGACGAGCTCCCATGGGTGGAGGAGTCATGCGCAGTGTCAACCAGTACAAATACTCAGCTGGGGTCCGGAACGTGCAGCAGGTCCTCTCCCTGCCCGGACAGATCCCTGTGCAGCAGGTGATGGAGTCGGCGGTCCACGTACGAGGACAGGAGCCCCTCACTGCTTCCATGTTAGCCTCCGCCCCCATGATGGAGCAGAAACAGCTGCTGGGCGAGCGTCTGTACCCACTGATCCAGGCCATGCACCCTGCGCTGGCCGGCAAGATCACTGGCATGCTGCTGGAGATCGACAACTCGGAGCTGCTGCACATGCTGGAGTCCCCCGAGTCCCTGCACTCCAAGGTGGATGAGGCAGTGGCCGTGCTGCAGGCTCACCAGGCTAAAGAGGTCTCCCCCAAGAAGTGATAAGTGCCCCCTCAGCGCCGGGCCCTGCTGCTATGGAGAAAGAGGCTTCAttgaagaaggaaaataaaaatgaaaaaaaaatgaaaaaaaatagtaaaatttaaaaatataaaataaaaaaggaaactagTCTTGCAAACCGCATTTGTTTAGGAAATGAGAAACCTGGCGAAGTGTGTTGGTCGGATGCAGAAAGTTTAATGAGCCAGTATAGGCCGTTTGtaagtgaagattttttttttttttttttttcaaacttttgttaccaaatattatatattcagaACCTTGTAGtttaaatttgtctttttctttgtgcattaaataaaaaccttaaGTGGATCTGGTTTATGGGTATTTATTA

Function

GO: NA

KEGG:

id description
K13126 PABPC; polyadenylate-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34205 lncRNA downstream 155079 37092649 ~ 37093300 (-) True G27335
TU34168 lncRNA downstream 278623 36967127 ~ 36969756 (-) True G27302
TU34133 lncRNA downstream 404414 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 480440 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 487790 36760345 ~ 36760589 (-) True G27252
TU34322 lncRNA upstream 307514 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 307948 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 311004 37570259 ~ 37570881 (-) True G27438
TU34352 lncRNA upstream 517814 37777069 ~ 37777318 (-) True G27463
TU34386 lncRNA upstream 757975 38017230 ~ 38017469 (-) True G27491
AMCG00007929 mRNA downstream 5433 37240084 ~ 37242946 (-) True AMCG00007929
AMCG00007926 mRNA downstream 9451 37217770 ~ 37238928 (-) True AMCG00007926
AMCG00007920 mRNA downstream 107092 37138227 ~ 37141287 (-) True AMCG00007920
AMCG00007916 mRNA downstream 224568 37013304 ~ 37023811 (-) True AMCG00007916
AMCG00007915 mRNA downstream 255405 36988663 ~ 36992974 (-) True AMCG00007915
AMCG00007927 mRNA upstream 1311 37260566 ~ 37267059 (-) True AMCG00007927
AMCG00007932 mRNA upstream 92356 37351611 ~ 37353614 (-) True AMCG00007932
AMCG00007933 mRNA upstream 110656 37369911 ~ 37383595 (-) True AMCG00007933
AMCG00007936 mRNA upstream 145186 37404441 ~ 37404863 (-) True AMCG00007936
AMCG00007935 mRNA upstream 164462 37423717 ~ 37438509 (-) True AMCG00007935
TU34246 other downstream 5396 37240089 ~ 37242983 (-) False AMCG00007929
TU33771 other downstream 2378572 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11616787 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11983428 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12980458 24265824 ~ 24267921 (-) False AMCG00007637
TU34303 other upstream 235656 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 308362 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 311702 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 313779 37573034 ~ 37588525 (-) True G27442
TU34400 other upstream 826674 38085929 ~ 38091878 (-) True G27502

Expression Profile