RNA id: AMCG00007929


Basic Information

Item Value
RNA id AMCG00007929
length 587
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00007929
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37240084 ~ 37242983 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGCACTCTGAAATGAATGTGCCTCTTCGGCTACCATACAAGCTCCGCATTGTTTCTACCCGGTACTGAGGGATGGTTTGTCCCTCGCCAGTGCCTGTAGTTCAGTCTGCGGTTTGAGTGTGTGCAAGTGAAGGTCGTGTCTTTCTCAGTTCATCCGCCATGTCGTCTGGAACCCTGGCCAAGCCCATCATGCGGGGCATGCTAGCCAAGCGCCTGCGCATCCACCTGCCCATCGCTTTAGGCCTGTCGATCTTCGTCGGAGCCATGGTCAAGTTCACAGTCACAGAGCCCAGGAAAAGGTCCTACGCAGAGTTCTACAAGAATTACGATGCCATGAAGGAATTCGAAGCGATGAGGGAGGCTGGCGTGTTTCAGAGTGTCGGGCCCAAAGGCAAATGAGCTGAAGTGAGTGTTTGTGTTAGAGATGCAGTGTCTCAAAACAAGGGTGGTGggGACGCTGTCATTCCTGGTCTGACTTTCCTGCACTTTGCTGATGTGATGATGCATTGAAGACGGTGGAGCTTGATTTTCTGCGTGTGCtcttataaaaatgtaataaaccatTTCCTCACTGAACATACCTGT

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02268 COX6C; cytochrome c oxidase subunit 6c

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34205 lncRNA downstream 146784 37092649 ~ 37093300 (-) True G27335
TU34168 lncRNA downstream 270328 36967127 ~ 36969756 (-) True G27302
TU34133 lncRNA downstream 396119 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 472145 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 479495 36760345 ~ 36760589 (-) True G27252
TU34322 lncRNA upstream 323823 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 324257 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 327313 37570259 ~ 37570881 (-) True G27438
TU34352 lncRNA upstream 534123 37777069 ~ 37777318 (-) True G27463
TU34386 lncRNA upstream 774284 38017230 ~ 38017469 (-) True G27491
AMCG00007926 mRNA downstream 1156 37217770 ~ 37238928 (-) True AMCG00007926
AMCG00007920 mRNA downstream 98797 37138227 ~ 37141287 (-) True AMCG00007920
AMCG00007916 mRNA downstream 216273 37013304 ~ 37023811 (-) True AMCG00007916
AMCG00007915 mRNA downstream 247110 36988663 ~ 36992974 (-) True AMCG00007915
AMCG00007910 mRNA downstream 298216 36936827 ~ 36941868 (-) True AMCG00007910
AMCG00007928 mRNA upstream 5433 37248379 ~ 37259255 (-) True AMCG00007928
AMCG00007927 mRNA upstream 17620 37260566 ~ 37267059 (-) True AMCG00007927
AMCG00007932 mRNA upstream 108665 37351611 ~ 37353614 (-) True AMCG00007932
AMCG00007933 mRNA upstream 126965 37369911 ~ 37383595 (-) True AMCG00007933
AMCG00007936 mRNA upstream 161495 37404441 ~ 37404863 (-) True AMCG00007936
TU33771 other downstream 2370277 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11608492 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 11975133 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 12972163 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 13267419 23971671 ~ 23972665 (-) True G25026
TU34303 other upstream 251965 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 324671 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 328011 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 330088 37573034 ~ 37588525 (-) True G27442
TU34400 other upstream 842983 38085929 ~ 38091878 (-) True G27502

Expression Profile