RNA id: AMCG00007932


Basic Information

Item Value
RNA id AMCG00007932
length 1683
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00007932
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37351611 ~ 37353614 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAACTTTTTCATTTGGAGTAAGCCAGAGACCCAGCCAGTTCTCCagtatctctctttctctcaccacAAACACAAGGCCAGTCATGACCACAGCTGTGCAGGATAGCAGGCCGCTGCACCGGGCCGTGAGGAAGATCAAGTGTGCCTCCATGGTGAACAGCCTGGCCAGGAGCTGGCAGACCTGGGCTAGCGAACACTCAGGGAAACAGGAGTCCATCCCCAAGGGCTGGATTCCCAGCTCTCTGGATGACGAGGATGACCAGAGGAGTaagaaaacagagagaaagaacatGCCCCCCTCTGTGACTCCCAGGACGCTGGCAGAGAACGGGCCGGTCGAAAACTCCAAAATCAAATCGGTCAGCGTGACCAAGAGCATCGCCCCAAAGAAGAGCGACTGTGGCAACGACCTGGTGAGCTTCATCACCGAGAAGATTAAGACCAAGAAAATAGGTGCCGGGGACAGGAAACCCTTCCTGGGCAACGAGTCGCCCACGCGCAGACGCCACTGTGGCAACAAGGGTGGTGCAGGGGTGAAGGCCTGGGTCCAGCAGGGAAAGGAGGAGGGCTGGCTGGGGTCACGGAGCAGCAGCCTGGACACTGAGGACAGCGGCCTGGGGGAGGAGGCGGGACTCAGCGACACTGACAGCAGCTCTGAAGACAAGCACAAAGACAGCCAACAAGCCAGAGAGAAGAGACTCAAGGACCGGCCAAAGatcAAGGTGGTGACTCTGAGTGACCTGAGGAGCACCTGGCAGAAGTGGTCTGAGCAGCACTTGGAGGAGCAGAAACTGAACCCATTCAGCGAGGAGTTTGACTATGAGCACGCCATGGCCACGCGGCTGCTCAGAGGGGATGCAGGCTATGGCCGGCCCAAGGAGGGCTCGAAGACGGAAGAGCGGGCAAGGAGGGCCCAGCAGCACATCCGCCGGGAGATGGATGAGATGTGCTTCATAATCCGGGACATGGGCATGTGCGGGCAGGACGGCCAGATCCGCATGACGTTCGGAAGGCTGTTTGACCGCTACGTGAAGATCTCTGACAAGGTGGTGGGCATCCTGCTGCGCTGCCGGAAGCATGGCATGGTGGCCTTCGAGGGGGAGATGCTGTGGAAGGGCCAGGACGATGATGTCATCATCACGCTGCTGGTGTAAGCTCATGGGTCACTGGGACTCCCGGTTTGGGCCGTTCAGCTTTGCCACAGCGTGATCACGTTGCGCGTGTACTTTACGGACAGATAAACCAAGCATGCAGGGCCAGATGCTGGGAATATACAtatgaatcaaatcaaatgcacaGATATGCTGTGGAATGTCATCAGCGTTGTGTATGAATGCCTGCATAACATTTTGTATTCCCAGAGCTAGGTTGTTCCTTTAGAAGAtgtactgtaatatttatttaaggtcTTGTAGACATGCAGTTTGTCGTCTCTCTGTTGTGCTCTGTACTAGTTCACTGCTTGATGTGTCAATTTCTTTCAAAGTGAAAGCACATTAGCCTTCTTAAAGAAGGAAGACTGGTAATTTGTAAAACagtttgaactgaaatgttttatttgttctgcgTTACTTTTGAAAATTTCCAAGGTGATTTTCTAAAGAATCTTTAAAACTAAACTGTCTTAGTTTTTTGCTCCtcgtctgtatttatttatttatttatttatttatttatttat

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34205 lncRNA downstream 258311 37092649 ~ 37093300 (-) True G27335
TU34168 lncRNA downstream 381855 36967127 ~ 36969756 (-) True G27302
TU34133 lncRNA downstream 507646 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 583672 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 591022 36760345 ~ 36760589 (-) True G27252
TU34322 lncRNA upstream 213155 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 213589 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 216645 37570259 ~ 37570881 (-) True G27438
TU34352 lncRNA upstream 423455 37777069 ~ 37777318 (-) True G27463
TU34386 lncRNA upstream 663616 38017230 ~ 38017469 (-) True G27491
AMCG00007927 mRNA downstream 84552 37260566 ~ 37267059 (-) True AMCG00007927
AMCG00007928 mRNA downstream 92356 37248379 ~ 37259255 (-) True AMCG00007928
AMCG00007929 mRNA downstream 108665 37240084 ~ 37242946 (-) True AMCG00007929
AMCG00007926 mRNA downstream 112683 37217770 ~ 37238928 (-) True AMCG00007926
AMCG00007920 mRNA downstream 210324 37138227 ~ 37141287 (-) True AMCG00007920
AMCG00007933 mRNA upstream 16297 37369911 ~ 37383595 (-) True AMCG00007933
AMCG00007936 mRNA upstream 50827 37404441 ~ 37404863 (-) True AMCG00007936
AMCG00007935 mRNA upstream 70103 37423717 ~ 37438509 (-) True AMCG00007935
AMCG00007941 mRNA upstream 134114 37487728 ~ 37490833 (-) True AMCG00007941
AMCG00007939 mRNA upstream 147170 37500784 ~ 37519123 (-) True AMCG00007939
TU34246 other downstream 108628 37240089 ~ 37242983 (-) False AMCG00007929
TU33771 other downstream 2481804 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11720019 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 12086660 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 13083690 24265824 ~ 24267921 (-) False AMCG00007637
TU34303 other upstream 141297 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 214003 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 217343 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 219420 37573034 ~ 37588525 (-) True G27442
TU34400 other upstream 732315 38085929 ~ 38091878 (-) True G27502

Expression Profile