RNA id: AMCG00007934


Basic Information

Item Value
RNA id AMCG00007934
length 1921
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00007934
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37469923 ~ 37481171 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAACTAAAGCGCACAGCAGCCAGTTTCCTCCGGCGCGGTGACGCTGCGGCTCGGCGTGATGGACAGCCAAACAAGCGTCTGCGGGGCTGGGGTTTTGCTTTCGGTTCAGTGTTGTGTCGACTCATTTGAAGATGGCAGGGCTGGAGCTGCTCTACACGTCTGTGGCCAGAGACATAGCCTGTCCGCAGGACGCGCTGCTGTGCTTCGTGCACTGGGAGGTCGTGAGGAACGGGTACAAGTGCCTCGGCACCGGAGACCAGGCCCAGAGCAGCGACAAACAGTCGGAGCTGCTGCCGGCGGGGTGGAACGGGAGCAGCGAGCTGTACACGCTGCGGTACCGGGCCGCCGGCGACGCGACCGGCCTGCTGCTCAAAGCCGTCACGGTGGATACGACGCTCATCTTCAACGTCATGGACTCGGCCTCAGAACAAGTTTATGATCTGACCGTGAGTTTCAGTGACTATGTGAATGCAGATGGTCTGCAGGCCTTTGACAGTGCGTTTAAGAACTCGGAGGAGCTGAGGTCCAAGGTGAAGTCGGGGCTGCTCCCGCCAGTCCCCTCCCAGAAGAGGAGGCCCGGCGAGAAGGCGGAGAAGAAGAGCCTGAGGGAGACCTCTCCAGACTCACGCCCCAGCAGAGACCCCCTCAGGATCCCTCCGTGGTCCCGCAACCCCCCCCGGCAGCCCGGCTGGCCAGACCCCATGGCTCCCTTTGCAGCTGGAGGTGCAGACTTGGATCCCTTTGGCGGCCGTCCTGGTGGCATGATCGTCGACCCGCTGCGCTCCGGGTTTCCGAGGTCCGGGTTCGACCCTTCCGCTGGCATTCCAGGCCGCCTCCCTCCAGGGGCCGTCCCGCCTGGAGCCCGTTTCGACCCGTTCGGACCAGTGGGCAGGAACCGGCCAGGGCCGGATCCTGACCACCTGCCCCCTCCTAGCTACGATGACATGTTCATGTAACCCTGGTTGGCTCTAACCCCCCGacacaccccccacacccccacccccactcccatGCCTACGGTCTTGGATCTGCAGTGGTTTGGAGTCGGAGCCCGGGCTTCCCCTGAAGGTTCTGCCCCTGCTGTGTAATAAACCATCTATATCCATGCTACAAAGGCTGTATAAACATAATCTAACTAACTAAGAAAACAGTGGTTTTTGTAGGGTTTATTTTTTGAAGCTGTACCGAACTGGCAAAGGCAGTGGAGTTTTCTTGTGTAACGGGAGGTGTCTTGCTACACAGAGTTGtgcgttctctctctctccagcccgTGCAGTGGAGCCCGGCTCTGTCGGGCTGTCTTCGTGGAAGCACTTTGTGAAGCTCTGCGGTGGTGTAGCGTGATCAAACGATCCGGACAGGGCTGAACAGCGCCGCTCTACTTCTGACGCTTCTGTGTTGTTCACCGCGTCGGGGTGGCTGCTGCTCACGCCCGTATTgtcagctgctgtttttttgttaaacccTGTGAGTCTTTCAGCCAAAGCGCCAGTCTTATCTCACCACCCGCGTGAGGCACTAAAATGCacttaaataaactaaaaacaggattttttttcctcatttagGAATACTTTGCaatgaaatgtttatgtaaCCGGATCATCTTAGGgttgaagaaaaacattagaaagGCTGGTATTAATTTATGGAAATGCCAATCAAAAAACAGGATTGTTAAGTGCAATTGTTAGTTGTATTTTTCACCACAATGGAAGGGGCCAGTTTAAAATCTGGTGATgactttgtgttgttgtttgtgaagAAGGAGTTCCTCACGGTAACTCCAGCTGCAGTGTTTCAACTGCTGCCCAAAAGGGTGTTCTGCAAGAGCGTGAGTTTCggtgttgttttgattttgaagctttgtagttttattatttccttgaaatgctttaataaatataaattgattagAA

Function

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06700 PSMF1; proteasome inhibitor subunit 1 (PI31)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34216 lncRNA upstream 263967 37203870 ~ 37205956 (+) False AMCG00007923
TU34204 lncRNA upstream 376593 37092649 ~ 37093330 (+) True G27334
TU34164 lncRNA upstream 513469 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 624399 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 701984 36767653 ~ 36767939 (+) True G27253
TU34287 lncRNA downstream 13988 37495159 ~ 37499385 (+) True G27400
TU34351 lncRNA downstream 295894 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 535697 38016868 ~ 38017144 (+) True G27489
TU34393 lncRNA downstream 546209 38027380 ~ 38027923 (+) True G27497
TU34464 lncRNA downstream 958403 38439574 ~ 38439892 (+) True G27552
AMCG00007931 mRNA upstream 123808 37336571 ~ 37346115 (+) True AMCG00007931
AMCG00007924 mRNA upstream 223116 37244267 ~ 37246807 (+) True AMCG00007924
AMCG00007923 mRNA upstream 253365 37204747 ~ 37216558 (+) True AMCG00007923
AMCG00007925 mRNA upstream 270099 37191982 ~ 37199824 (+) True AMCG00007925
AMCG00007930 mRNA upstream 298821 37168866 ~ 37171102 (+) True AMCG00007930
AMCG00007938 mRNA downstream 14027 37495198 ~ 37496202 (+) True AMCG00007938
AMCG00007940 mRNA downstream 15046 37496217 ~ 37501731 (+) True AMCG00007940
AMCG00007937 mRNA downstream 72822 37553993 ~ 37574386 (+) True AMCG00007937
AMCG00007942 mRNA downstream 97897 37579068 ~ 37590574 (+) True AMCG00007942
AMCG00007949 mRNA downstream 521779 38002950 ~ 38010795 (+) True AMCG00007949
TU33841 other upstream 1849122 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7694888 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8466150 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9015216 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9375182 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 663813 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 687399 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 874758 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 950874 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1211568 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile