RNA id: AMCG00007936


Basic Information

Item Value
RNA id AMCG00007936
length 423
RNA type mRNA
GC content 0.66
exon number 1
gene id AMCG00007936
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37404441 ~ 37404863 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGCTGGGCGCGTGGAGCCTCGGCGCGCTGCTGGTGGCATGCGTGGCCGGGGGCGTGGCGATGGTGGCGGCTgcagggggtggtggtggtggtggtggtggcgaACGCAGTCAGCGGCGAGGGGGTGGCGATGGCCGGAGGAGGCTGCACAGAGTCCAGCACGGCCACTGCAGCTACACCTTCGTCTTGCCTGAGGTGGACAGCTGCCGTGGGGCTCCGGACACATACAGCAGCGCCAACGTGGTGCAGAGGGACGCCCCCTCGGCGGAGAACGAGTGGTCGACGCAGAAGTTGCAGCACCTGGAGCACGCCATGGAGAACAACACACAGTGGCTGCAGAAGGTAAGAGCCACTCTGCCCTTTACTCCTGCCCTTGTGCCCCAATGGAGGACCTGTGAAGGTGCCATGAGGGTAGAGTAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34205 lncRNA downstream 311141 37092649 ~ 37093300 (-) True G27335
TU34168 lncRNA downstream 434685 36967127 ~ 36969756 (-) True G27302
TU34133 lncRNA downstream 560476 36843330 ~ 36843965 (-) False AMCG00007907
TU34108 lncRNA downstream 636502 36767653 ~ 36767939 (-) True G27254
TU34106 lncRNA downstream 643852 36760345 ~ 36760589 (-) True G27252
TU34322 lncRNA upstream 161906 37566769 ~ 37566983 (-) True G27435
TU34323 lncRNA upstream 162340 37567203 ~ 37567566 (-) True G27436
TU34325 lncRNA upstream 165396 37570259 ~ 37570881 (-) True G27438
TU34352 lncRNA upstream 372206 37777069 ~ 37777318 (-) True G27463
TU34386 lncRNA upstream 612367 38017230 ~ 38017469 (-) True G27491
AMCG00007933 mRNA downstream 20846 37369911 ~ 37383595 (-) True AMCG00007933
AMCG00007932 mRNA downstream 50827 37351611 ~ 37353614 (-) True AMCG00007932
AMCG00007927 mRNA downstream 137382 37260566 ~ 37267059 (-) True AMCG00007927
AMCG00007928 mRNA downstream 145186 37248379 ~ 37259255 (-) True AMCG00007928
AMCG00007929 mRNA downstream 161495 37240084 ~ 37242946 (-) True AMCG00007929
AMCG00007935 mRNA upstream 18854 37423717 ~ 37438509 (-) True AMCG00007935
AMCG00007941 mRNA upstream 82865 37487728 ~ 37490833 (-) True AMCG00007941
AMCG00007939 mRNA upstream 95921 37500784 ~ 37519123 (-) True AMCG00007939
AMCG00007943 mRNA upstream 386578 37791441 ~ 37827192 (-) True AMCG00007943
AMCG00007945 mRNA upstream 461587 37866450 ~ 37876752 (-) True AMCG00007945
TU34246 other downstream 161458 37240089 ~ 37242983 (-) False AMCG00007929
TU33771 other downstream 2534634 34869435 ~ 34869807 (-) True G26961
TU31949 other downstream 11772849 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 12139490 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 13136520 24265824 ~ 24267921 (-) False AMCG00007637
TU34303 other upstream 90048 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 162754 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 166094 37570957 ~ 37571488 (-) True G27439
TU34329 other upstream 168171 37573034 ~ 37588525 (-) True G27442
TU34400 other upstream 681066 38085929 ~ 38091878 (-) True G27502

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1653356 True 827 lncRNA 0.50 1 NC_048581.1 37127664 ~ 37128490 (+)