RNA id: AMCG00007938


Basic Information

Item Value
RNA id AMCG00007938
length 775
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00007938
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37495198 ~ 37496202 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCGATGGAGGCGGACGCGCTGCGCGGAGAGGAGTGATCCAGGGCCGGTAGGTCTGCTCTGATGGCCGCCGACACGCAGTGCGGCCCGGCTGGTGAACCACAGCTAGACCGCAGCTGTACCGCCTGGCCTCCGCTCTCAAGGGGCTGTAGCGCCGCACATTGACCCCCGAGCCACCTCTCGGTTCTCCCGGAAAGCGGAAGAATAGGGAAGCCGGTTTGTTTCGCGGGTTGTTATTCTGATGATTAGCTACAATACGGTGCGAACGCTGCCGAGAAATGGCGGATTTGCGCTCTAGATGTGTAAATGCTTCTCATTTGTTCCAATGAAGAGCCTGTTTTCAGTCCGTGCCTTGAGCCTGCAGTGGAAACGCGCCGGCCGCCCTTGTGCGCTCATTTTCGCTGCTCTCGCCGCTGTGAGGACGCGCGTCCTGCGCTGGTTGCCCCCGGCTCGGCAGGCTGTGCGGCGGCGATGGGCACGATCCGGGCAGGACTTGCAAACATCCGCCACGATGTACTGCCTACAGTGGCTGCTGCCAGTGCTCCTCATCCCCAAGCCCCTGAACCCGGCCCTGTGGTTCAACCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTTCTTCTGGAAAGGAAGCCCTGTACCATCTGTGCCTTGGTCTTCCTGGCAGCGCTGTTTCTCATCTGCTACAGCTGCTGGGGCAACTGCTTCTTGTACCACTGCGGCGACTCCCCCCTGCCCGAGTCGGCCCATGACCCCAGCATCGTGGCCTCCTAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34216 lncRNA upstream 289242 37203870 ~ 37205956 (+) False AMCG00007923
TU34204 lncRNA upstream 401868 37092649 ~ 37093330 (+) True G27334
TU34164 lncRNA upstream 538744 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 649674 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 727259 36767653 ~ 36767939 (+) True G27253
TU34351 lncRNA downstream 280863 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 520666 38016868 ~ 38017144 (+) True G27489
TU34393 lncRNA downstream 531178 38027380 ~ 38027923 (+) True G27497
TU34464 lncRNA downstream 943372 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 945334 38441536 ~ 38442071 (+) True G27553
AMCG00007934 mRNA upstream 14027 37469923 ~ 37481171 (+) True AMCG00007934
AMCG00007931 mRNA upstream 149083 37336571 ~ 37346115 (+) True AMCG00007931
AMCG00007924 mRNA upstream 248391 37244267 ~ 37246807 (+) True AMCG00007924
AMCG00007923 mRNA upstream 278640 37204747 ~ 37216558 (+) True AMCG00007923
AMCG00007925 mRNA upstream 295374 37191982 ~ 37199824 (+) True AMCG00007925
AMCG00007940 mRNA downstream 15 37496217 ~ 37501731 (+) True AMCG00007940
AMCG00007937 mRNA downstream 57791 37553993 ~ 37574386 (+) True AMCG00007937
AMCG00007942 mRNA downstream 82866 37579068 ~ 37590574 (+) True AMCG00007942
AMCG00007949 mRNA downstream 506748 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007950 mRNA downstream 514974 38011176 ~ 38014794 (+) True AMCG00007950
TU33841 other upstream 1874397 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7720163 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8491425 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9040491 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9400457 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 648782 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 672368 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 859727 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 935843 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1196537 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064469 True 955 mRNA 0.49 2 NC_007117.7 51769760 ~ 51771634 (-)
grasscarp (Ctenopharyngodon idella) TU568162 True 76 lncRNA 0.51 1 CI01000340 15419793 ~ 15419868 (-)
eurasian perch (Perca fluviatilis) TU57953 False 580 TUCP 0.52 2 NC_053115.1 32743879 ~ 32746989 (-)