RNA id: AMCG00007940


Basic Information

Item Value
RNA id AMCG00007940
length 306
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00007940
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37496217 ~ 37501731 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCGGTGGACTGTGGACAACgtgcccccttcccccccatCCTCTGCCTCCGCCACCACCCCTGAGGACCCAAGATCTGTCTCTCCATTTTGCATGGACTGTTTGCCCAGCTATTTCTTCATCTTCGTCCCTCCCTTGTCTCCTTTGTCTTCTGCACTTGAGGCCTGGGGGACCTCCAGACCCAGAGCCCAGCCCAGTGACACTGAGAGTGGCCTGCTGTCTCCTCACAAGATGGTGATCTCCGTGTCTGAGTTCTGCAAGGCCTCCTCCTGCAGCTCTTGGCAGATCCGGTCCATCCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34216 lncRNA upstream 290261 37203870 ~ 37205956 (+) False AMCG00007923
TU34204 lncRNA upstream 402887 37092649 ~ 37093330 (+) True G27334
TU34164 lncRNA upstream 539763 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 650693 36843981 ~ 36845524 (+) True G27263
TU34107 lncRNA upstream 728278 36767653 ~ 36767939 (+) True G27253
TU34351 lncRNA downstream 275334 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 515137 38016868 ~ 38017144 (+) True G27489
TU34393 lncRNA downstream 525649 38027380 ~ 38027923 (+) True G27497
TU34464 lncRNA downstream 937843 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 939805 38441536 ~ 38442071 (+) True G27553
AMCG00007938 mRNA upstream 15 37495198 ~ 37496202 (+) True AMCG00007938
AMCG00007934 mRNA upstream 15046 37469923 ~ 37481171 (+) True AMCG00007934
AMCG00007931 mRNA upstream 150102 37336571 ~ 37346115 (+) True AMCG00007931
AMCG00007924 mRNA upstream 249410 37244267 ~ 37246807 (+) True AMCG00007924
AMCG00007923 mRNA upstream 279659 37204747 ~ 37216558 (+) True AMCG00007923
AMCG00007937 mRNA downstream 52262 37553993 ~ 37574386 (+) True AMCG00007937
AMCG00007942 mRNA downstream 77337 37579068 ~ 37590574 (+) True AMCG00007942
AMCG00007949 mRNA downstream 501219 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007950 mRNA downstream 509445 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007947 mRNA downstream 517161 38018892 ~ 38026850 (+) True AMCG00007947
TU33841 other upstream 1875416 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7721182 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8492444 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9041510 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9401476 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 643253 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 666839 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 854198 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 930314 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1191008 38692739 ~ 38708915 (+) True AMCG00007970