RNA id: AMCG00007942


Basic Information

Item Value
RNA id AMCG00007942
length 4610
RNA type mRNA
GC content 0.56
exon number 22
gene id AMCG00007942
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37579068 ~ 37590574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTGCGGCGAGTGTTTTGGAGGACCGGAGGTGTGTGAGGAGAAACGTCCCGCAGAAGAAAGCGGTGCGCTTGAGTGACGGGGCTGCGGGGCGAAATGCGAGAAGACCAAAGCGACCCCGAGTCTGGGTCGGAGTCCGGGAGGCCGGACGAGCCTGCGGTGCGGAGGAGCCTGGAAGCTCTGTGCCGAGAGCTGAACATGGACGAGGAGACCGGGAGGGACGCGCTACGGAGCTTTACAGCCATCCGGGAGACCTACACCCTGGAGGGAGACGTGGTGCACTGGTTGGCCTGCGCCCTGTACGCTGCCTGCAGGAAGGGCCGCACTCCCACCGTAGGCAAGGGAGTGATGGAGGGTAACTGTGTGTCTCTGACCCGGATCCTGCGCTCCTCTAAGCTGAGTTTAATCCAGTTCTTTAACAAGATGAAGAAGTGGGCAGACATGTCCAATCTGTCTGCGGAATTCCGGGACCGGATCGCGCGCCTGGAGAGGAATTTCGAGGTCTCCACGGTGATCTTTAAGAAGTTCAAGCCCATTTTCCTGGACATGTTCCAGAGCCCGTGGGGGGAGCCGCCCAGACAGCCGCGCAGCCGCAAGCACAGGCGCCTGCCCTGCCACATCAGTGATGTGTTTAAGTTTTGCTGGACCCTCTTTGTGTACACTAAAGGGAACTTCCGAATGATCGGCGATGATTTGGTGAATTCCTACCACCTCCTGCTCTGCTGCCTGGACCTGGTTTTCGGCAATGTGCTACTGTGTGCGAACAGGAAGGACCTCATCAACACTCAGTTCAAAGGGTTGCCTGCGGAGTACCACAGCCCAGACTACAGCCCGTCCGCCGAGCCCCCCTGTGTCATCGACCGGCTGTGCCAGCTGCATGACGGGCTGGTAGTAGAAGCCAAGGGAATTAAGGAGCATTACTTCAAGCCCTACATTAAAAAGCTCTTCGAGAGACAGATCCTGAAGGGGAGCGAGGAATCTCTGATTGGACTGCTGGATGTGTCCAACTTCATTGACAACAACAAAGCGGTGAACAGAAAGTACGAGGAGTACGTGCTGACGGAGGGCGATTTCGATGAGCGGGTGTTCTTGGGAGCGGACGCGGAGGAGGAGATTGGGACGCCCCGCAAGGCTGCGCTGGACCTCCCTGAGGGCCGGCTCTCCGCACGCATGCAGGTGGAGTGCAACCTGCAGCAGCACTTTGAGAAGACGCGGTCCTTCGCCCCCTCTACTCCGCTGACGGGACAGAGGTACCTGAAGGACAAGGATCCCCTGGTGACCCCTGTGTCCTCGGCCACCCAGAGTGTCAGCCGGCTGCAGAGCATGGTGTCCGGGCTGCGCAACTCCCCCAGCGAGCAGctgctgcaggtcttcagGTCATGTTCCCGCGATCCTACAGAGACGATCTTGAAGTGGGTGAAGGGCTGGGGCGAGACTTTCCGACAGCACTACACAAAGCACACCGAGGAGCAGCCGGGGTCCCACATGGATTTTGCTGATAACCGGTTAAAACTGGCAGAGATCCTGTACTTCAAGATCCTGGAGAATGTCATGGTCCAGGAAACTCGCCGGCTGCACGGCAAAGACATGGCAGTGCTGCTGGAGCAAGACATCTTCCACTGCTCTCTGATGGCCTGCTGCCTGGAGGTGGTGCTGTTCGCTTACAGCTCCCAGCGCACTTTCCCCTGGATCATCAACATATTCAAGCTGCCGCCTTTCTACTTCTACAAGgtGATCGAGGTGTTTATCCGGTCTGAGGAGGGGCTTTCCCGGGACATGGTGAAGCACCTGAACAGCATTGAGGAGCAAATTCTGGAGAGCCGGGCCTGGTCCTCGAACTCCGCACTGTGGGAGGCTCTGAAGGCGGTAAACGACAAAGTGCCCACGGTGGAGGAGGTGACACTACCCAGTAACTTTGAAACGGGGAACGGCCACAGTGGCCCCACGCATCTGCCCCTGGTCGCCCTGTCGCCCATCATCCACCCACGGCTCAGGGAGGTGAGGATCGGCCTGGGAGGCAGCGCCCACAAGGCAGACATCCCTCCTTCCCCGATCTCCGTGCATGACCGCTACAGCTCACCCACTGCGGGCAGCGCCAAGCGCCGGCTCTTCGGCGACGACGGCTCCTCTGCGTCTCCGGTCAAGAAGATCTCCTTCTCCCAGGGGGGGAGCTTGAAGATCGTGCCCACCTCGCCCTGCGACGCCACGCACATGTCCCCGGCCCGCCCCGTCTTCACCATGACGACTGCCACCATCACCATACCTGTGCAAGGTGTGGCGAACGACACGGGAGCAATTTCCTTCTTCCAGCTGCAGTCCGGGGAGCGCAGTCCTCTCACTGCCCAGGCATTGCTCCCCGCCTCCCCCAGCCGGGCCGGGCTGGGGCCCCCCACCCTGGACCCCCCGAGCAGCGCCAACAAACCCCGGAAGACGGGCTCTCTGGCGCTGTTCTTCAGGAAGGTGTACCACTTGGCCAGTGTGCGGCTGCGAGACCTCTGCCTGAAGCTGGATGTCTCTCTGGAGCTGCGCCGGAAGATCTGGACCTGCTTCGAGTACTCGGTGGTCAACCACCCAGAGCTCATGAAGGATCGGCACCTGGACCAGCTTCTCATGTGTGCGGTGTACATCGTGTCCAAGgcgacAAAGGAGGAACGCACTCTGCAAGACATCATGGGGTGCTACCGCAGCCAGCCTCAGGCCAGCAGCCATGTGTACAGAAGTGTCCTCCTGGAGAAGGCTGATGATCAGTCCACCAATAATGGAGACATTCCCAACATGGACGAGGtCGAGGAGGATGAGAGGGGCTCAGGGTCAGACATGTGTGGCGGAGAGTTGAGAGGTGACCTCATCCAGTTCTACAACAAAGTCTACGTGCTGAAGATGACCGGGTTCGCCCACAAGTACAACAGCGCGAGTGCTGAGCCGGGGCTTGCGGCGCCCCCCTTGTCTCCGTACCCCTCGATCAGAGCCCATCCCTTGTCCCCACGCCGTGTCTCCCAGAGACACTCGGTGTACATCTCTCCGCACAAGAATGGCTCCTGCCCAACCTCCTCTTCTGCCATCACCTACAAGTTTAACGGGAGCCCTTCCAAGAACCTGAGAGACATCAACAGCATGATCAAGCAGGGCGAGCGGACGTGCTGGAAGCGGGCGTTCACCATGGACAGCGACTCCGAGTCGCCGGCCAAGCGGCTCTGCTCCGAGAGCGACGATGTGCTGCTCAAACGCCTGCAGGACGTGGTGAGCGAGAGAGCCAACCGCTGACCCCCTGCTTATCCAGGGTCAGCGCTGATGCCACGCAGCCCACGCAGTGCTGCTCTCAACACTTGGACAGCACCACCTTCCACGTAGAACGATGGGAAGGGTGTTATTTCTTTTGCTGTCTCGGCTCCAGTTGTCACTTAGGAATCTGCAGCAATGGTTCTGGCCTCTTGACCCCTACAGCATGTGACTGTAACTCGAGCTGTGCACGTGTCTTCATCAGCACCATGTCACAGGAGTGTAAGCTATGAAAATcatatattgtttgtgtttaattacacTGTCTGCCGAGTTCTTGGTTCTAAACTGAAAGGTAATGGTTTACCTTTTCCTCTGTGTATGGCATGTGTaccagaggagagagagagaacccaaGCATTAATCACTTCTGACTCTCGCTGGACTGGGTGTTTCTGCTGGGATGCAGATGTGCTACAAACGTGGACCTATGAGAGGCAGACCAAGTTACTGTTTCCTACATTAGATAGTTGCCAAACTATCGCATTTGTTCTTGTGTTTAAGGTTTGTCATGGGTCTATAGTGCGATGTGTGGCATCGACACTTCTAACCATCGTTACCATTTTCATTTGTCATGCTTCCAATGTTATACCGTTAACAGTAATTTGTTCTTATCGGAGTCTGGAGTTGCCTTGTTTCCTCTGCTCTCCTTGGACTCTCTTTTGCATGGACCTGTGCAGTTGATTGACAGTAGAGAACTCTTGAAGTGTAATATTACTTTGAGTGGAATGTACCCTGACTGTATTCAGTAGAATATTACTGAAGCTTTAATGGGCTGGATACTGTTGGGTATCAGGCTTCCAGTTCCCCTGTTAAGTGAAGGGCTGCCCTCGACAGTGCTGCACAGACTGGCCTTACAGACTCTTCTGATCGGCTCTGACTGCAGTGCCTTTGCTTGCCCAGTCGTGTCAGACATCTTTCAGTTAGCAGCGATCCAGTGCAGGTCTCTAGGCTCGGTGGCGTTTCATTCTGCCCagtgttggtttaatttgcatTGCTTCACTTTAATTTCTCGGCTGTGGATCTGCAGCTCCCTGTCAGACTGTGGGTCTAATGAAAGGACTGAAGCAGCTCGAGCTTGCGTCCAAGCCCGGCCTCGGCGCTGTGGCTTCATAATCCAGTGCACATAAATTATGGTTGTCTtactccttttttatttgtttttggttgtttccACTGAGACCTGTACAGTGAAAACCccttttgtatgtattttaaaaaggtgaagTTTGTAATAAGAACtttaaatccccccccccaaaagagTAAACGCTTTATATAGACCAGTAGCTTGACATgtacatatgaaaataaagtgcaagctttttaaaa

Function

GO: NA

KEGG:

id description
K04681 RBL1; retinoblastoma-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34287 lncRNA upstream 79683 37495159 ~ 37499385 (+) True G27400
TU34216 lncRNA upstream 373112 37203870 ~ 37205956 (+) False AMCG00007923
TU34204 lncRNA upstream 485738 37092649 ~ 37093330 (+) True G27334
TU34164 lncRNA upstream 622614 36956182 ~ 36956454 (+) True G27300
TU34125 lncRNA upstream 733544 36843981 ~ 36845524 (+) True G27263
TU34351 lncRNA downstream 186491 37777065 ~ 37777462 (+) True G27462
TU34384 lncRNA downstream 426294 38016868 ~ 38017144 (+) True G27489
TU34393 lncRNA downstream 436806 38027380 ~ 38027923 (+) True G27497
TU34464 lncRNA downstream 849000 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 850962 38441536 ~ 38442071 (+) True G27553
AMCG00007937 mRNA upstream 4682 37553993 ~ 37574386 (+) True AMCG00007937
AMCG00007940 mRNA upstream 77337 37496217 ~ 37501731 (+) True AMCG00007940
AMCG00007938 mRNA upstream 82866 37495198 ~ 37496202 (+) True AMCG00007938
AMCG00007934 mRNA upstream 97897 37469923 ~ 37481171 (+) True AMCG00007934
AMCG00007931 mRNA upstream 232953 37336571 ~ 37346115 (+) True AMCG00007931
AMCG00007949 mRNA downstream 412376 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007950 mRNA downstream 420602 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007947 mRNA downstream 428318 38018892 ~ 38026850 (+) True AMCG00007947
AMCG00007951 mRNA downstream 476814 38067388 ~ 38070843 (+) True AMCG00007951
AMCG00007948 mRNA downstream 490182 38080756 ~ 38086751 (+) True AMCG00007948
TU33841 other upstream 1958267 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 7804033 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 8575295 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9124361 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9484327 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 554410 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 577996 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 765355 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 841471 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 1102165 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile