RNA id: AMCG00007946


Basic Information

Item Value
RNA id AMCG00007946
length 357
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00007946
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37912578 ~ 37916476 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCATTCTGAAGGCAGTGAAGTGGATAGCTCCGCCCACCCCGATCGCACCCCCAGAGCTGCTGGCAGTGGGTGCCACCTACCTGTGGATTAAACCCAACGCTAACTCCATCATCGGCGATGGGCCCATCATCCTGAAGGAGGTGGAGTATCGCACCACCACGGGCAACTGGGCTGAGACCCACATCGTCGACTCGCCCACCTACAAGCTGTGGCACCTCGACCCGGATGTGGAGTACGAGATCAAGGTTCTGCTGACCCGGCCTGGGGAAGGAGGCACCGGCCCGCCCGGCCCGCCTCTCTTCTCGCGCACCAAATGTGCCGGCCAGTGCCATCAGATGAAACACTTCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34352 lncRNA downstream 135260 37777069 ~ 37777318 (-) True G27463
TU34325 lncRNA downstream 341697 37570259 ~ 37570881 (-) True G27438
TU34323 lncRNA downstream 345012 37567203 ~ 37567566 (-) True G27436
TU34322 lncRNA downstream 345595 37566769 ~ 37566983 (-) True G27435
TU34205 lncRNA downstream 819278 37092649 ~ 37093300 (-) True G27335
TU34386 lncRNA upstream 100754 38017230 ~ 38017469 (-) True G27491
TU34469 lncRNA upstream 523127 38439603 ~ 38439862 (-) True G27557
TU34553 lncRNA upstream 794376 38710852 ~ 38712337 (-) True G27626
TU34574 lncRNA upstream 832651 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA upstream 847968 38764444 ~ 38767568 (-) True G27639
AMCG00007945 mRNA downstream 35826 37866450 ~ 37876752 (-) True AMCG00007945
AMCG00007943 mRNA downstream 85386 37791441 ~ 37827192 (-) True AMCG00007943
AMCG00007939 mRNA downstream 393455 37500784 ~ 37519123 (-) True AMCG00007939
AMCG00007941 mRNA downstream 421745 37487728 ~ 37490833 (-) True AMCG00007941
AMCG00007935 mRNA downstream 474069 37423717 ~ 37438509 (-) True AMCG00007935
AMCG00007944 mRNA upstream 8795 37925271 ~ 37936478 (-) True AMCG00007944
AMCG00007953 mRNA upstream 230043 38146519 ~ 38148924 (-) True AMCG00007953
AMCG00007954 mRNA upstream 248735 38165211 ~ 38176299 (-) True AMCG00007954
AMCG00007955 mRNA upstream 260045 38176521 ~ 38181573 (-) True AMCG00007955
AMCG00007958 mRNA upstream 510872 38427348 ~ 38434063 (-) True AMCG00007958
TU34329 other downstream 324053 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 341090 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 343294 37567617 ~ 37569284 (-) True G27437
TU34303 other downstream 413186 37494911 ~ 37499392 (-) True G27416
TU34246 other downstream 669595 37240089 ~ 37242983 (-) False AMCG00007929
TU34400 other upstream 169453 38085929 ~ 38091878 (-) True G27502
TU34421 other upstream 244810 38161286 ~ 38164542 (-) True G27522
TU34684 other upstream 1130813 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 1137677 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 1172446 39088922 ~ 39091755 (-) False AMCG00007993

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035209 False 3595 mRNA 0.57 25 NC_007131.7 1442530 ~ 1560849 (-)