RNA id: AMCG00007947


Basic Information

Item Value
RNA id AMCG00007947
length 3429
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00007947
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38018892 ~ 38026850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACACCGTTTTTAAAGACTTTTTTGTAATAATCAGAAACAGCCTAGTTTAATCATGGCAAAAGATCGACTGGCGAAGATGTTTTAACAGAAATACCAGTaccaatacaacaaaaacagcagagcaCTGTTGGATATATGtgtagagcagtacattaaagcacacttacattttaaatatattataggtgtagttaaaagcattaaataccaACCATTTATAAcaatcttaatttgttttccaactgTGGCCCCCCAAACACTCAGCCGCATGAATGTGCAGTGAGCGCACCTCCTACACCTGTCTGCAGACCTGCAGCGCCCAGACCCCAGACACTGCGCAGACCGGCGCATGCGCCTGAGCCGCGTCCCAATCTGAGCGCATCATTATTACCATTACATTGACAAAGAAAGATATCAAACAAAACGTTGCGACTGGTGTTAAAATGAGCGCCTCCGTGCAGCACAGGCTCTCTCTTCCCACAGTGCAGGGCCGGCGGCTCGGGAAGCGCGGCGGGGGTGGGGCCTAATTATACAAACATTCGAACCTTACGTAAGGGGCGCAGCAGCCAATGGGAGTGCGCAACGCTCTGCGGTCCCCCGGCTGTGATTGGCCGGCGAGAGACAGCGCTCCGAGTCCCGCCCCTCGGCCCCCTGGAAGCCGGCGTGTGTGAATCCGGCGGCGCGTCCGTGTTCAAGGGCGCCGGTGGCCCTGGCTCGCGTCGTGAGGAGGGCGATGCATTTTCAGCTCCTACTACTAGGACTGGGCGAAGTGCGACCTCGGTCTGTGTATTGAACTGCTCTGTGACAGCCTCGCTTCCCTGCGGCCGGGCTTAGCAATGAGCCGGTGTCCACGCGCTGCCCCGTCTATCCTGGACGACCACATCCTCACCTCCGAGGTGCTGCCGGTGGTCATCATTGGAAATGGCCCGTCGGGGATCTGCCTGTCCTACCTGCTGTCAGGGTTCACCCCCTATGTAACGGAAGAGGCGACACACCCCAACACTCTTCTGCAGCGAAAACTGGAGGAGAGACCCCACCAGTCCCTGCTGGAGCAGgaCCTGGAGTACCTGTGTGAGGGGCTGGAGGGCCGTTCCTCGAACCCGGTGGCCGTGTTGTTTGACTCGCTCCTGCTGCCGGGAAGCGACTTCGGCATGGACTGTGCCTCCGTGCTGCGGTGGCGCCACGAGCCGGAGCGCGCCGTCCCGCACCTGGTCTTGGGCAAGGGGCCGCCGGGGGGAGCCTGGCATGCCATGGAGGGCTCCATGCTCACACTCAGCCTGGCCAACTGGATGGAGCTGCCAGGCTTGAAGCTGAAGGATTGGGTCAGAGAGAAGCGCAGGAACCTCCGTAACGACCGCGCCACACCGGCCGAGATCGCCTTGTACTACCAGCACTACGTCTCCCACAGCGGCCTGCAAGACAACTTTGCCAGCGGCACCCTGGTGACGTCACTGCGCCGCGTGGCATGCAAGCCGGTTGCCGGTGCAGAGCGGGGCCCTGGGACAGTGTGGGAGGTGCGGGGCGTGCAGAGCGGCGAggcaggggaggggggcaagGCGGAGGAGCTGCCATTCTGCGTGTGTGCGGAGAGCGTGGTGCTGGCCACGGGCACGCACGACATCCCTGCCCGGCTGGCCGTGCCCGGTGAGGACCTGCCCTTCGTGGGCCACAGCTTCTGGGAGCTGGAGGCGGCCATCGCGGGGGGGCAGCTGGGGGGCCACGTGGACCCTGTGCTGATCGTGGGCGCGGGGCTGACAGCCGCGGACGCCGTGCTGGCAGCGCACCACTTGAACGCGCCCGTTTACCACGTCTTCCGCCGTGGCGTGGCTGACCCCGGCCTCATCTTCAACCAGCTGCCTAAGGTGCTGTACCCCGAGTACCACAAGGTGCACCAGATGATGATCCAGCAGCAGCACGGGGGAGGGGGCCCGGCCGACCCGGACGCCCCCCCCGGCAGCAGCCCTGGCCTGTTCTGCGGCTCCTACCCGGGCTACGCCAGCTTCCCCCGGCACCGCGTGGTCTCCTTCCGGCCTGGCAAGAAGTGCGTGCTGGAGGACGAGTGCGGCCGGCGCACCGTGCTGCAGGTGTCCATGGCGCTGGTGCTGATCGGGTCACACCCCAACCTCTCCTTCCTGCCCGAAGGCGGGCGGCGGCTGGGCGTGGACCCAGCCCAGCCAATCTCCTGCCGCCGCAACCCTGTGGACGTGGACCCTTTCACCCACCAGGTGCTGGCCGAGCCGGGGCTGTACGCCATGGGCCCGCTGGTCGGGGAGAACTTTGTGCGCTTCCTTAAGGGGGGCGCCCTGGCCATCAGCAGTGACCTGTCCCGGCGGCGCGGCTcgcgggtggtggaggaggggcGGCACGTGTagggggggtggaggaggacGACAGTTGTTTCTGTTAGCAACACCAGCCCAAATGGTGGAGGGAAATCGTGCCCTGCCTGTGTGCGCTGCTCTGACGGGCCCTCTTGACCTCTGTGCTCTCAGACCAGCCGCAGCAGGGCGCTCTGACGATACAGGGTCTGATCATGCACTTACGCTGCCCTCTGCACAGGCCTCGAGCGCGTGGGGGAGCTCTGCCGGCCTCATGGCGGATGATAATGGCCTCAATATTTCTCTTCTGGTTAaaagctgcttgttttctttatacAACTGTATTCACAGGAAACcatgccttttatttatttctccattCATTGTTAGTTTCTGTCCGTAGTGTATTGCACTTGTAcatgatgtttgttttcaaaacctCTGAAAAGCTGCTACTTTATCCCATAAATAATGCCACCCATAGCATGTTCAATGTTTGAACTCAAGCTCGTCTATGTTAAGCTGTTCGTGGCCTGGGGTCAGGGAGTGTATAGGATGTCGATCTCTCTCCCACACTCGGCACTGAACTCATTTTTCACCCTGTACAAAACCTCGAGTCGATTTCAAGATCGCCAGAGCAGGGGTCACTGGGTAACTGCGCACTCTGAGGGCGGGCCGACTGTGAAAACCAGTTCACACTCAGACAATATATTGTCTCACTGCGTTTTCTCCAGTGCATAGCTATCCACTTGGTCCGTGTTGGGTCCACATTTGATTTACAATTCTAAATCTACAAAAGTTTGACCATTTCCAGTGTTCACAAGCATTAATCGGAATGAAGTGTAGTTATGAATGGCATTATTTATCCTGGCAGTTCGACACAACCGCAGAAACAAGTTCCATCCGTGTAGCCCCTTTACATGAAATGTGGTTGTCTGTACTTTAATATGTGCTGCTCGTGGTCTAGCACACGCAGACGGGCTGTTTTTTTGCCTTTAGTGGGAAGTGTCTCAGAGAGGTGGGTGGCGAGTGTGAACTGAGGCCGGAGTGTGGCTCCACATTGCAGTACTATCAAAATAAATTGATCTattatcagattttttttttt

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34384 lncRNA upstream 1748 38016868 ~ 38017144 (+) True G27489
TU34351 lncRNA upstream 241430 37777065 ~ 37777462 (+) True G27462
TU34287 lncRNA upstream 519507 37495159 ~ 37499385 (+) True G27400
TU34216 lncRNA upstream 812936 37203870 ~ 37205956 (+) False AMCG00007923
TU34204 lncRNA upstream 925562 37092649 ~ 37093330 (+) True G27334
TU34393 lncRNA downstream 530 38027380 ~ 38027923 (+) True G27497
TU34464 lncRNA downstream 412724 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 414686 38441536 ~ 38442071 (+) True G27553
TU34473 lncRNA downstream 454447 38481297 ~ 38482391 (+) True G27561
TU34503 lncRNA downstream 645021 38671871 ~ 38729032 (+) True G27581
AMCG00007950 mRNA upstream 4098 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007949 mRNA upstream 8097 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007942 mRNA upstream 428318 37579068 ~ 37590574 (+) True AMCG00007942
AMCG00007937 mRNA upstream 444506 37553993 ~ 37574386 (+) True AMCG00007937
AMCG00007940 mRNA upstream 517161 37496217 ~ 37501731 (+) True AMCG00007940
AMCG00007951 mRNA downstream 40538 38067388 ~ 38070843 (+) True AMCG00007951
AMCG00007948 mRNA downstream 53906 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007952 mRNA downstream 141771 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007957 mRNA downstream 385660 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007956 mRNA downstream 446866 38473716 ~ 38476488 (+) True AMCG00007956
TU33841 other upstream 2398091 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 8243857 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 9015119 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9564185 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9924151 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 118134 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 141720 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 329079 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 405195 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 665889 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile