Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00007949 |
| length | 1203 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 12 |
| gene id | AMCG00007949 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 38002950 ~ 38010795 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0050976 | detection of mechanical stimulus involved in sensory perception of touch | biological_process |
| GO:0006506 | GPI anchor biosynthetic process | biological_process |
| GO:0034394 | protein localization to cell surface | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0003923 | GPI-anchor transamidase activity | molecular_function |
| id | description |
|---|---|
| K05293 | PIGU; GPI-anchor transamidase subunit U |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU34351 | lncRNA | upstream | 225488 | 37777065 ~ 37777462 (+) | True | G27462 |
| TU34287 | lncRNA | upstream | 503565 | 37495159 ~ 37499385 (+) | True | G27400 |
| TU34216 | lncRNA | upstream | 796994 | 37203870 ~ 37205956 (+) | False | AMCG00007923 |
| TU34204 | lncRNA | upstream | 909620 | 37092649 ~ 37093330 (+) | True | G27334 |
| TU34164 | lncRNA | upstream | 1046496 | 36956182 ~ 36956454 (+) | True | G27300 |
| TU34384 | lncRNA | downstream | 6073 | 38016868 ~ 38017144 (+) | True | G27489 |
| TU34393 | lncRNA | downstream | 16585 | 38027380 ~ 38027923 (+) | True | G27497 |
| TU34464 | lncRNA | downstream | 428779 | 38439574 ~ 38439892 (+) | True | G27552 |
| TU34465 | lncRNA | downstream | 430741 | 38441536 ~ 38442071 (+) | True | G27553 |
| TU34473 | lncRNA | downstream | 470502 | 38481297 ~ 38482391 (+) | True | G27561 |
| AMCG00007942 | mRNA | upstream | 412376 | 37579068 ~ 37590574 (+) | True | AMCG00007942 |
| AMCG00007937 | mRNA | upstream | 428564 | 37553993 ~ 37574386 (+) | True | AMCG00007937 |
| AMCG00007940 | mRNA | upstream | 501219 | 37496217 ~ 37501731 (+) | True | AMCG00007940 |
| AMCG00007938 | mRNA | upstream | 506748 | 37495198 ~ 37496202 (+) | True | AMCG00007938 |
| AMCG00007934 | mRNA | upstream | 521779 | 37469923 ~ 37481171 (+) | True | AMCG00007934 |
| AMCG00007950 | mRNA | downstream | 381 | 38011176 ~ 38014794 (+) | True | AMCG00007950 |
| AMCG00007947 | mRNA | downstream | 8097 | 38018892 ~ 38026850 (+) | True | AMCG00007947 |
| AMCG00007951 | mRNA | downstream | 56593 | 38067388 ~ 38070843 (+) | True | AMCG00007951 |
| AMCG00007948 | mRNA | downstream | 69961 | 38080756 ~ 38086751 (+) | True | AMCG00007948 |
| AMCG00007952 | mRNA | downstream | 157826 | 38168621 ~ 38170146 (+) | True | AMCG00007952 |
| TU33841 | other | upstream | 2382149 | 35611116 ~ 35620801 (+) | False | AMCG00007873 |
| TU32939 | other | upstream | 8227915 | 29765828 ~ 29775035 (+) | False | G26258 |
| TU32711 | other | upstream | 8999177 | 29003095 ~ 29003773 (+) | True | AMCG00007769 |
| TU32501 | other | upstream | 9548243 | 28453009 ~ 28454707 (+) | False | AMCG00007735 |
| TU32400 | other | upstream | 9908209 | 28083822 ~ 28094741 (+) | True | G25822 |
| TU34416 | other | downstream | 134189 | 38144984 ~ 38146850 (+) | True | G27518 |
| TU34423 | other | downstream | 157775 | 38168570 ~ 38170061 (+) | False | AMCG00007952 |
| TU34447 | other | downstream | 345134 | 38355929 ~ 38412929 (+) | False | AMCG00007957 |
| TU34460 | other | downstream | 421250 | 38432045 ~ 38436595 (+) | True | G27551 |
| TU34527 | other | downstream | 681944 | 38692739 ~ 38708915 (+) | True | AMCG00007970 |
