RNA id: AMCG00007951



Basic Information


Item Value
RNA id AMCG00007951
length 399
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00007951
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38067388 ~ 38070843 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGTTCGTCCCCCGTCCCTCGGACTACAGTGGGATGACTGAGGCTTTGCATGCTAACCCATCTTGGAGCTGCCCTGGCTCCTACCAGGGTGGTGCGGTTGGGCATCATTCTACCCCACCAGAGGTGTGTGGAGCCACAAAGGAAATTGGGTCGGCTCTGACTCGGATGTGCATGAGACACCGGAGCATCGAGTCCAAACTCAAACTCTTCACAACGGCTCTGACGGAGAGTCTGATCAGCCCCCTGGAGCTGAAGATCGAGGAGTGGAAGAAGGTGGCCAGCCAGTTGGACAAGGACCATGCCAAAGAGTATAAAAAGGCCCGTGCGGACATCAAGAAAAAATCTTCGGACACCATCAAGCTGCAGAAGAAAGTAAAGAAAGGTAAGACGCGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34393 lncRNA upstream 39465 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 50244 38016868 ~ 38017144 (+) True G27489
TU34351 lncRNA upstream 289926 37777065 ~ 37777462 (+) True G27462
TU34287 lncRNA upstream 568003 37495159 ~ 37499385 (+) True G27400
TU34216 lncRNA upstream 861432 37203870 ~ 37205956 (+) False AMCG00007923
TU34464 lncRNA downstream 368731 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 370693 38441536 ~ 38442071 (+) True G27553
TU34473 lncRNA downstream 410454 38481297 ~ 38482391 (+) True G27561
TU34503 lncRNA downstream 601028 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 721606 38792449 ~ 38834594 (+) True G27648
AMCG00007947 mRNA upstream 40538 38018892 ~ 38026850 (+) True AMCG00007947
AMCG00007950 mRNA upstream 52594 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007949 mRNA upstream 56593 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007942 mRNA upstream 476814 37579068 ~ 37590574 (+) True AMCG00007942
AMCG00007937 mRNA upstream 493002 37553993 ~ 37574386 (+) True AMCG00007937
AMCG00007948 mRNA downstream 9913 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007952 mRNA downstream 97778 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007957 mRNA downstream 341667 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007956 mRNA downstream 402873 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007959 mRNA downstream 493632 38564475 ~ 38570223 (+) True AMCG00007959
TU33841 other upstream 2446587 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 8292353 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 9063615 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9612681 28453009 ~ 28454707 (+) False AMCG00007735
TU32400 other upstream 9972647 28083822 ~ 28094741 (+) True G25822
TU34416 other downstream 74141 38144984 ~ 38146850 (+) True G27518
TU34423 other downstream 97727 38168570 ~ 38170061 (+) False AMCG00007952
TU34447 other downstream 285086 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 361202 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 621896 38692739 ~ 38708915 (+) True AMCG00007970

Expression Profile