RNA id: AMCG00007952


Basic Information

Item Value
RNA id AMCG00007952
length 935
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00007952
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38168570 ~ 38170146 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCATGGCGTCCTGGTAGAGCGGATGAAGCTGTTGTCTATCGGAGCGTGAGTGTCAGCAAGAGACGCGAAGAAAAGCACGTCGGAGAAACCGCTGCTAACGGCGACAGGGCGGAACACAGCGCACATACACACGGTAAGGTGGGATGTATGAAGAGCGGGGGTCTGCTGCGCCGCGGCGCTGTTTTCAAGGCCGAGCCGAGGTGACATTGCACGGATCCGGATGGAAGAGCGGCTGCAGCGCGGCGTGCCCAAGACTGGAGGACGCGCTCATAACGAGCACACTAGTTTGCGCTTGTTTTGAGCAAAAGGGCTGGATAATGCGTGCAGGATTAGTGTGCAGCAGCCGGGACTCTGGCCAGAGTGATCGAGCAGCTGATGCCTTCACCGGGACTGGCCACACTGGGAATACTTTCACAGTTTACAAAATGCCAGTGGCAGTCGGACCGTACGGGCAGTCCCAGCCCAACTGCTTTGACAGGGTCAAGATGGGCTTCATGATGGGCTTTGCGGTGGGCATGGCGGCAGGGGCCATGTTCGGCACCTTCTCCTGTCTCAGGATCGGGATGAGAGGCAGGGAGCTGATGGGAGGTGTGGGGAAGACCATGATGCAGAGTGGGGGCACGTTTGGGACGTTCATGGCCATCGGAATGGGCATCCGCTGCTGAGACCCTACCCCACATCTGCGCACTTTAAACGCGATTCTTAGGCCTAGCAAATCCATTCCCCTGTTGTGTACTCACTGTAAATAATTGTGAAACAAAGGAacgaataaaaacaaacacggATGATAATCACAACTGTGTACAGTGATTGGTGGAGAAGGACAGGGAGGTGGGATCCTGGTTGAGGGCACTGCTGTAAAAAGATCCTGAAAAGATGCTCTGAGGCTGGAGGGCCAGATATCTAATTgttcagttaaataattaagaacTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34393 lncRNA upstream 140698 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 151477 38016868 ~ 38017144 (+) True G27489
TU34351 lncRNA upstream 391159 37777065 ~ 37777462 (+) True G27462
TU34287 lncRNA upstream 669236 37495159 ~ 37499385 (+) True G27400
TU34216 lncRNA upstream 962665 37203870 ~ 37205956 (+) False AMCG00007923
TU34464 lncRNA downstream 269428 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 271390 38441536 ~ 38442071 (+) True G27553
TU34473 lncRNA downstream 311151 38481297 ~ 38482391 (+) True G27561
TU34503 lncRNA downstream 501725 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 622303 38792449 ~ 38834594 (+) True G27648
AMCG00007948 mRNA upstream 81870 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007951 mRNA upstream 97778 38067388 ~ 38070843 (+) True AMCG00007951
AMCG00007947 mRNA upstream 141771 38018892 ~ 38026850 (+) True AMCG00007947
AMCG00007950 mRNA upstream 153827 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007949 mRNA upstream 157826 38002950 ~ 38010795 (+) True AMCG00007949
AMCG00007957 mRNA downstream 242364 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007956 mRNA downstream 303570 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007959 mRNA downstream 394329 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007965 mRNA downstream 405976 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007963 mRNA downstream 450976 38621122 ~ 38627736 (+) True AMCG00007963
TU34416 other upstream 21771 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 2547820 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 8393586 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 9164848 29003095 ~ 29003773 (+) True AMCG00007769
TU32501 other upstream 9713914 28453009 ~ 28454707 (+) False AMCG00007735
TU34447 other downstream 185783 38355929 ~ 38412929 (+) False AMCG00007957
TU34460 other downstream 261899 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 522593 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 1332933 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1662243 39832389 ~ 39834936 (+) False AMCG00008020

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064448 True 954 mRNA 0.41 3 NC_007117.7 50401620 ~ 50404732 (-)