RNA id: AMCG00007954


Basic Information

Item Value
RNA id AMCG00007954
length 2185
RNA type mRNA
GC content 0.51
exon number 14
gene id AMCG00007954
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38165211 ~ 38176299 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGCTGGATGGACGAAAGATGGAGGCGCTCAATAAACTCAAGCAGTTTGACGCGTATCCCAAAACCTTGGAGGATTTTAGGATAAAGACATGCGGCGGAGCCACCGtTACTATCATCAGCGGCCTGATCATGTTGATATTGTTCTTCTCCGAATTGCAGTATTACCTGACGAAGGAGGTGCACCCTGAGCTGTATGTGGACACGTCCCGGGGGGACAAGCTGAAGATCAACATTGACATCCTTTTCCCTCACATGCCCTGTGCCTATCTGAGCATCGATGCCATGGACGTGGCCGGGGAGCAGCAGCTGGACGTGGAGCACAACCTGTTCAAACAGCGTCTGGACAAGGATGGCAAGGCAGTCACCCCTGAGGCAGAGAGGCACGAGCTGGGGAAGGAGGAGGGCGAGGTGTTCGACCCCAGCAAGCTGGACCCAGAGCGGTGCGAGAGCTGCTACGGGGCTGAGACCGAGGACCTGAAGTGCTGTAACACCTGTGACGATGTGCGGGAGGCCTACAGGCGCCGGGGCTGGGCCTTCAAGAACCCCGACACCATCGAGCAGTGCAAGAGGGAGGGCTTCAGTCAGAAGATGCAGGAGCAGAAGAACGAGGGCTGCCAGGTCTATGGCTTCCTGGAGGTCAACAAGgtggcAGGAAATTTCCACTTTGCCCCAGGGAAAAGTTTCCAGCAGTCCCACGTTCACGTGCACGCTGTGGAAATTCATGACCTGCAGAGTTTTGGGCTAGACAATATCAACATGACTCACTACATCACACACCTCTCGTTTGGGAAGGACTACCCTGGAATAGTCAACCCCCTGGATGGCACCAAGGTGGACACACAGCAAGCTTCTATGATGTACCAGTACTTTGTTAAGATTGTCCCAACAATCTATGTGACGGGCGACGGAGAGGTGGTGAAGACCAACCAGTTCTCTGTGACACGGCATGAGAAGGTGGCGAACGGGCTGATTGGGGACCAGGGGCTCCCAGGTGTGTTCGTTCTGTACGAGCTCTCCCCCATGATGGTAAAGTTCACGGAGAAACAGAGGTCATTCACACATTTCCTGACTGGTGTGTGTGCCATCATCGGGGGGGTCTTTACAGTGGCTGGGCTGATCGACTCGTTGATCTACCACTCGGCGAGGGCCATCCAGAAAAAGATCGAGCTGGGGAAAGCCTCGTAGGGCCCCACGGGGTCCACCACACGACGCACATGCCCCCTGCCACTCCCATCCCACAGAGCCGCATAGGTGAggctcagacagacagacagacaccgaCCGACCGACAGACAGATGAACAGACAATACACTCAGGTGCCCTCCTGGCCCCCCAGGCCACTCCCCTGCCAGCCCACCTGTCAGCCTGCGTCCCTCACTGCCTCCGCCCCACCGGACACGGAGCAAGATCTCACGCCTCCACGTCCGAGTGTCTCTCGCTTTGATGGTAACTGGGGCCCGAGGGCTGTCTGGTCACTGGACACTTGAACACTTGAGGGACAGTCCGATACTAATGGGGTTAAAGCCTGGAAAAATAGcttcatgttttgtattttttatatttgtttttttaatttcctgctcATCATCATTGTGCTCTGTCTGTATGTTGTGGAAATGgagtcatgtttatttttactattcATAACATAACTCTTCAcgtgtttaataataataataattattattattattaaccataCAAGAAGATAATAGAAATCATCGATTCATGGAGTGAGTGCTTTTTCGTCTTTTTATCTTGTCAGGAGATTGTGTTTTGTGGCGGGGCAGTGTCACTCGTGTGATGGGCAGACTGCTGTTCTAAGTCAGAGGCGGAACGATGATAGTAATAATTTCAAACAGCATTGAAAAGGACTCCTCTCACGAATTGGGACCCCAGTCCTCAGTTTCACCTCCTTGACCGCCCTGATGCAGTGCCGTTTTGTGAATATATCATTTCTTTACTTTCATGGGTTTTTTGTAATTCTCTTGCTGCTACTGAACGTGTGGTGATTGTGTTTGTCCTGGGAGACTTCCTTATGACTGACGAGCTGTGCGTGTCATCTGGGCTCAAGGAGGTTCGGCCCGTGTCCTCCGGGTGTCagagagatgtatttatttttgtcgaCCTGTTAtttctgaatgaatgaaaacaagaataataaaatctgtCTGGATTATG

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20367 ERGIC3, ERV46; endoplasmic reticulum-Golgi intermediate compartment protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34386 lncRNA downstream 147742 38017230 ~ 38017469 (-) True G27491
TU34352 lncRNA downstream 387893 37777069 ~ 37777318 (-) True G27463
TU34325 lncRNA downstream 594330 37570259 ~ 37570881 (-) True G27438
TU34323 lncRNA downstream 597645 37567203 ~ 37567566 (-) True G27436
TU34322 lncRNA downstream 598228 37566769 ~ 37566983 (-) True G27435
TU34469 lncRNA upstream 263304 38439603 ~ 38439862 (-) True G27557
TU34553 lncRNA upstream 534553 38710852 ~ 38712337 (-) True G27626
TU34574 lncRNA upstream 572828 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA upstream 588145 38764444 ~ 38767568 (-) True G27639
TU34602 lncRNA upstream 599862 38776161 ~ 38779752 (-) False G27661
AMCG00007953 mRNA downstream 16287 38146519 ~ 38148924 (-) True AMCG00007953
AMCG00007944 mRNA downstream 228733 37925271 ~ 37936478 (-) True AMCG00007944
AMCG00007946 mRNA downstream 248735 37912578 ~ 37916476 (-) True AMCG00007946
AMCG00007945 mRNA downstream 288459 37866450 ~ 37876752 (-) True AMCG00007945
AMCG00007943 mRNA downstream 338019 37791441 ~ 37827192 (-) True AMCG00007943
AMCG00007955 mRNA upstream 222 38176521 ~ 38181573 (-) True AMCG00007955
AMCG00007958 mRNA upstream 251049 38427348 ~ 38434063 (-) True AMCG00007958
AMCG00007961 mRNA upstream 307512 38483811 ~ 38492269 (-) True AMCG00007961
AMCG00007962 mRNA upstream 320193 38496492 ~ 38501834 (-) True AMCG00007962
AMCG00007960 mRNA upstream 335620 38511919 ~ 38514244 (-) True AMCG00007960
TU34421 other downstream 669 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 73333 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 576686 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 593723 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 595927 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 870990 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 877854 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 912623 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 1324022 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2839860 41016159 ~ 41017248 (-) True G28202

Expression Profile