RNA id: AMCG00007955


Basic Information

Item Value
RNA id AMCG00007955
length 1547
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00007955
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38176521 ~ 38181573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAGGCAGAAGATGGCCGCCTTGCGAGTGGCAGTGTTGTCCGGTGCCGGGAGGACTCTCCTCAACACCCCGAAAACCCTGCACACTCCCCGGGCCAGTATGTCCTTTGCCAGCCTCTCTCGGGGGAAGAGGATGGCACTGTCCACCCTGGGTGTGCTGGCCGCGGGGGGTGCTGGCTTGGCGCTGGCTCTGCACCGCTCAGTCAAGGCTTCTGAGCTGGAGCTGCACCCCCCATCCTACCCCTGGAGCCACAGTGGCTTTCTGCAGTCACTGGACCATGCCAGTGTCCGTCGCGGCTATCAGGTGTACAAGCAGGTGTGTGCTGCCTGCCACAGCATGGAGTACCTGGCCTTCAGAAACCTGACGGAGGTGGTGGATGGTCCCGATGAGAACGGGGAGATGTTCACTCGCCCGGGCAAGCTGTCGGACTACTTCACCAAGCCCTACCCCAACCCCGAGGCCGCCCGCGCAGCCAACAACGGAGCCCTGCCCCCTGACCTCAGCTACATCGTCAATGCCAGGTACCACCAGCCCCGCCCTGCTCTCCGacacgGTGGGGAGGACTATGTGTTCTCGTTGCTGACAGGGTACTGTGATCCCCCCGCTGGCGTGGAAGTGAAGGAAGGGGTCTACTACAACCCCTACTTCCCCGGCCAGATGATCGGCATGGCCCCTCCCATCTACAACGAAATCCTGGAGTATGATGACGGCACTCCGGCCACCATGAGCCAAGTGGCGAAGGACGTGTGCACCTTCCTGCGCTGGGCAGCCGAGCCAGAACATGACCAGCGCAAACGCATGGGGCTGAAGGTCCTCATGGGTTCCGTCATCTTTGTGCCGCTGATCTACTACTTGAAGAGGCACCGCTGGACTGTACTGAAGAGTAGGAAGATCGCCTACAGGCCCCCCAAACATTAAGACACCCCCACCTTGCATCTGCCGGACCACAGCATCGCCACTGACGGGCTCCGGCCTCCAGCTGTTCGgactaagattttaaaatcattgTGAAATacccaaaaacaaacattctgcTGCGGAGGGAACTAGGGAGGTCTGTTTACATCGACATCCCGGGGGCGCGTGCTCAGCTGACGCCTCTCCCCTCGCCACCTCGCCCCCATCACAGACGGGGCTAAAAGTTGTTTTCCTGtaagaatgaaataaatgattgcAATACGACAACAcgttctttttaaattgtgtacgTATGGCGTGTTTTGCGTTTCTGTTTAGGCTCCTGGATCATTGGCTGCATCGACTCCTGGTTGCTGCAGTCTTCGTTGGGCTTGTAGGCTGGTGTCATCCTTATGTTAAAGGACCTatacacatttttgtgtaaatatttaaataccatGGTATGCACAATAAAATTACAAACTTAAACCTACCTGGCTGCTGTTTGCTTCTGTTCTGTGCCGTGAGATCCAGTTTTCCCCTCCAGCTTTGGTTAATTGTTTGAATGATTTGACATTGTATGAATTAAGAAGTTGTTTTAATGTAGCCGTTTGGCATTATAGATTAAAAGTATACCTATATAATTAAA

Function

GO:

id name namespace
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00413 CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34386 lncRNA downstream 159052 38017230 ~ 38017469 (-) True G27491
TU34352 lncRNA downstream 399203 37777069 ~ 37777318 (-) True G27463
TU34325 lncRNA downstream 605640 37570259 ~ 37570881 (-) True G27438
TU34323 lncRNA downstream 608955 37567203 ~ 37567566 (-) True G27436
TU34322 lncRNA downstream 609538 37566769 ~ 37566983 (-) True G27435
TU34469 lncRNA upstream 258030 38439603 ~ 38439862 (-) True G27557
TU34553 lncRNA upstream 529279 38710852 ~ 38712337 (-) True G27626
TU34574 lncRNA upstream 567554 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA upstream 582871 38764444 ~ 38767568 (-) True G27639
TU34602 lncRNA upstream 594588 38776161 ~ 38779752 (-) False G27661
AMCG00007954 mRNA downstream 222 38165211 ~ 38176299 (-) True AMCG00007954
AMCG00007953 mRNA downstream 27597 38146519 ~ 38148924 (-) True AMCG00007953
AMCG00007944 mRNA downstream 240043 37925271 ~ 37936478 (-) True AMCG00007944
AMCG00007946 mRNA downstream 260045 37912578 ~ 37916476 (-) True AMCG00007946
AMCG00007945 mRNA downstream 299769 37866450 ~ 37876752 (-) True AMCG00007945
AMCG00007958 mRNA upstream 245775 38427348 ~ 38434063 (-) True AMCG00007958
AMCG00007961 mRNA upstream 302238 38483811 ~ 38492269 (-) True AMCG00007961
AMCG00007962 mRNA upstream 314919 38496492 ~ 38501834 (-) True AMCG00007962
AMCG00007960 mRNA upstream 330346 38511919 ~ 38514244 (-) True AMCG00007960
AMCG00007966 mRNA upstream 427129 38608702 ~ 38612581 (-) True AMCG00007966
TU34421 other downstream 11979 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 84643 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 587996 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 605033 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 607237 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 865716 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 872580 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 907349 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 1318748 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2834586 41016159 ~ 41017248 (-) True G28202

Expression Profile