RNA id: AMCG00007956



Basic Information


Item Value
RNA id AMCG00007956
length 396
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00007956
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38473716 ~ 38476488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGTTGCCAGTCGTTGCTGTGCTGCCTCCTGCTCAGCTTGACCAGCGTGCTGATGGTCTACACACACATGGTGATTGAGGAGCAGGTCACCATGAATTTGTCTTCGGCACCAAGTGTGCCGGGCATGAAGCAGATAGATGTCCCATCTATCATCATAGTAGaactACCGAAAACCGTGAAAAAGAACAACATAAAGAcgacagacagaaaacaaagaaaaAACAAGTTCATCGACGCGCCCAGGAAACCGCGGCCGTCTCCCCCGGCCAACTGCGTGCCTCTGTGGGGCAGCTGCAAGGTGCCGGGCGCCGTGTGCTGCCAGCCCTGCGCCTTCTGCCAGTGCCGCCTGTTCAAGACCGTGTGCTACTGCCGCATGGGCAACCCCCGCTGCTGA

Function


GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34465 lncRNA upstream 31645 38441536 ~ 38442071 (+) True G27553
TU34464 lncRNA upstream 33824 38439574 ~ 38439892 (+) True G27552
TU34393 lncRNA upstream 445793 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 456572 38016868 ~ 38017144 (+) True G27489
TU34351 lncRNA upstream 696254 37777065 ~ 37777462 (+) True G27462
TU34473 lncRNA downstream 4809 38481297 ~ 38482391 (+) True G27561
TU34503 lncRNA downstream 195383 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 315961 38792449 ~ 38834594 (+) True G27648
TU34610 lncRNA downstream 379043 38855531 ~ 38855767 (+) True G27667
TU34617 lncRNA downstream 429566 38906054 ~ 38908182 (+) True G27670
AMCG00007957 mRNA upstream 50561 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007952 mRNA upstream 303570 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007948 mRNA upstream 386965 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007951 mRNA upstream 402873 38067388 ~ 38070843 (+) True AMCG00007951
AMCG00007947 mRNA upstream 446866 38018892 ~ 38026850 (+) True AMCG00007947
AMCG00007959 mRNA downstream 87987 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007965 mRNA downstream 99634 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007963 mRNA downstream 144634 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007964 mRNA downstream 159994 38636482 ~ 38661331 (+) True AMCG00007964
AMCG00007970 mRNA downstream 216355 38692843 ~ 38704205 (+) False AMCG00007970
TU34460 other upstream 37121 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 60787 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 303655 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 326866 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 2852915 35611116 ~ 35620801 (+) False AMCG00007873
TU34527 other downstream 216251 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 1026591 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1355901 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1580144 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1764824 40241312 ~ 40247238 (+) True AMCG00008036

Expression Profile