RNA id: TU34447



Basic Information


Item Value
RNA id TU34447
length 531
RNA type TUCP
GC content 0.56
exon number 2
gene id AMCG00007957
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38355929 ~ 38423155 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTCTGCGGAGAGCGCCCTGCCAGTGCGTGTGTGCGGCGCTgcggctgtgtctgtgtgcctctGCATCTGTCTTATTGCTCTCCgcatttttattgcttctgaAATTTTGCTTGTTGAAAAACGAGAAAGGggaggaggacgaggacaaGACACAgtaataagagagagagagcgagagagagagagagagagagaagaagaacaTTTAAAAGGTGTGAGAGAaccaaaaacaaaggaaaagcgAAAGCGAAACCGCGAAGATGTCCCTCAAGGTCCAGACCAGTAACATCACCAACAAGAACGACCCGAAGTCCATCAACTCGCGGGTGTTCATCGGGAACCTCAACACGGCCGTGGTGAAGAAGACCGACGTGGAGACCATCTTTTCCAAGTACGGCCGGGTGCTGGGCTGCTCCGTGCACAAGGGCTACGCCTTCGTCCAGTACGCCAGCGAGCGGCACGCCCGGGGGGCCGTGCTGGGGGAGAACGGGCGGGTGCTGGCCGGGCAGACACTGGGTACGCCGTCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34393 lncRNA upstream 328006 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 338785 38016868 ~ 38017144 (+) True G27489
TU34351 lncRNA upstream 578467 37777065 ~ 37777462 (+) True G27462
TU34287 lncRNA upstream 856544 37495159 ~ 37499385 (+) True G27400
TU34216 lncRNA upstream 1149973 37203870 ~ 37205956 (+) False AMCG00007923
TU34464 lncRNA downstream 26645 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 28607 38441536 ~ 38442071 (+) True G27553
TU34473 lncRNA downstream 68368 38481297 ~ 38482391 (+) True G27561
TU34503 lncRNA downstream 258942 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 379520 38792449 ~ 38834594 (+) True G27648
AMCG00007952 mRNA upstream 185783 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007948 mRNA upstream 269178 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007951 mRNA upstream 285086 38067388 ~ 38070843 (+) True AMCG00007951
AMCG00007947 mRNA upstream 329079 38018892 ~ 38026850 (+) True AMCG00007947
AMCG00007950 mRNA upstream 341135 38011176 ~ 38014794 (+) True AMCG00007950
AMCG00007956 mRNA downstream 60787 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007959 mRNA downstream 151546 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007965 mRNA downstream 163193 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007963 mRNA downstream 208193 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007964 mRNA downstream 223553 38636482 ~ 38661331 (+) True AMCG00007964
TU34423 other upstream 185868 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 209079 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 2735128 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 8580894 29765828 ~ 29775035 (+) False G26258
TU32711 other upstream 9352156 29003095 ~ 29003773 (+) True AMCG00007769
TU34460 other downstream 19116 38432045 ~ 38436595 (+) True G27551
TU34527 other downstream 279810 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 1090150 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1419460 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1643703 40056632 ~ 40059386 (+) True G27974

Expression Profile