RNA id: AMCG00007962


Basic Information

Item Value
RNA id AMCG00007962
length 666
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00007962
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38496492 ~ 38501834 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTTGTTCGGGAAGCTGTTCGGCAGCGGGGGGAAAGGAGGCAAGGGGCCGAGCCCGCAGGAGGCGATACAGAAGCTCCGGGACACGGAGGAGATGCTAACCAAGAAACAGGAGTTTCTGGAAAAGAAGATCGACCAGGAGCTTCTGACGGCCAAGAAACACGGCACTAAAAACAAACGAGCCGCCCTACAGGCCCTGAAGCGCAAGAAGCGGTACGAGAAGCAGCTGACGCAGATTGACGGTACGCTCTCCACCATCGAATTCCAGAGGGAGGCGCTAGAGAACGCCAACACCAACACTGAAGTGCTCAAGAACATGGGCTTCGCTGCCAAGGCCATGAAGGCTGCCCACGAAAACATGGATATTGATAAAGTGGATGACTTGATGCAGGACATCACAGAGCAGCAGGAGCTGGCGCAGGAGATCTCTGACGCCATCTCCAAACCAGTAGGATTCGGAGAAGACTTTGATGAGGATGAGCTATTGGCAGAACTGGAAGAGCTGGAACAGGAGGAACTGGACAAAAACCTGCTGGACATCGTGGGCCCCGAGAGTGTGCCGCTCCCCAATGTGCCCTCAACATCACTACCAGCCAGACCAGcaaagaaagaggaagaggaggatgacaTGACGGACCTGGAGCGCTGGGCTGCGGCCATGTAG

Function

GO: NA

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34469 lncRNA downstream 56630 38439603 ~ 38439862 (-) True G27557
TU34386 lncRNA downstream 479023 38017230 ~ 38017469 (-) True G27491
TU34352 lncRNA downstream 719174 37777069 ~ 37777318 (-) True G27463
TU34325 lncRNA downstream 925611 37570259 ~ 37570881 (-) True G27438
TU34323 lncRNA downstream 928926 37567203 ~ 37567566 (-) True G27436
TU34553 lncRNA upstream 209018 38710852 ~ 38712337 (-) True G27626
TU34574 lncRNA upstream 247293 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA upstream 262610 38764444 ~ 38767568 (-) True G27639
TU34602 lncRNA upstream 274327 38776161 ~ 38779752 (-) False G27661
TU34601 lncRNA upstream 275403 38777237 ~ 38779752 (-) True G27661
AMCG00007961 mRNA downstream 4223 38483811 ~ 38492269 (-) True AMCG00007961
AMCG00007958 mRNA downstream 62429 38427348 ~ 38434063 (-) True AMCG00007958
AMCG00007955 mRNA downstream 314919 38176521 ~ 38181573 (-) True AMCG00007955
AMCG00007954 mRNA downstream 320193 38165211 ~ 38176299 (-) True AMCG00007954
AMCG00007953 mRNA downstream 347568 38146519 ~ 38148924 (-) True AMCG00007953
AMCG00007960 mRNA upstream 10085 38511919 ~ 38514244 (-) True AMCG00007960
AMCG00007966 mRNA upstream 106868 38608702 ~ 38612581 (-) True AMCG00007966
AMCG00007967 mRNA upstream 133223 38635057 ~ 38645982 (-) True AMCG00007967
AMCG00007974 mRNA upstream 174840 38676674 ~ 38679151 (-) True AMCG00007974
AMCG00007973 mRNA upstream 177631 38679465 ~ 38692774 (-) True AMCG00007973
TU34421 other downstream 331950 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 404614 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 907967 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 925004 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 927208 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 545455 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 552319 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 587088 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 998487 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2514325 41016159 ~ 41017248 (-) True G28202

Expression Profile