RNA id: AMCG00007963


Basic Information

Item Value
RNA id AMCG00007963
length 2308
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00007963
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38621122 ~ 38627736 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACTGTCCTTTGCGCACGGCGTGACGGCGTCGCCTGCATTGCCTTCCGGTACGACCTGCCGTGCCGCCGCGTCCTCGGCTCGGCGACAACACAGCGGCGCACGTCGGTTCCGCGGGTCCTGCTGTGCGGAGGAGCGGCGACATGAGCGCCGACAACGCTGCGGCGGACGGCACGGTGCCTCTGCGCAACCTGCTGAACTCGGTGCGCTGCGTGCGGGACCGGGTGAGAGATGGAGAGTCCAAGGAGGCGAGTCAGGCATTCAAGGCTGCGTCCCAGGAGGCTACCAGACTGAGCCTAGCCTTCTCCAAGCCCCCCCTGCCTTCCCCTGATgGCTGTGACCAACTCGCAGACTCCATTCAGAAGAGTGTCCTAGCACTGGCTACAGTCTACTACTGGCTCCCCAAAAGCCAAGGCATCACTCTGCGCCGGATGGTCCGCGACGCCACGGCGGAGGTGCTGGGGGGCGTGGCACAGCTGATTGAGGTCATCCTCAGCTCCCCCCTGCAGAGTTTATCCCAGGAGCAGCTGACCTCGACTGGCGGAGTGTGGTCGTCCTGTGACCAGTTCACACACCTGCCTAGAGACAACCAGATGGCCGTGCTGGGAGTGCTGTCCTCCTGCTTTGGTGTGGTTAAGGACGCCATAGAGGAGATGGAGCAGGCGCAGTCGGACAGTTTGGACCCTTTCAGCGACGTCCTGGACGACGAGGGGCTGGACAGCCGGGGGAACCAGGACACCTACTGGTCAGAGGCGGACCGGCGGCTGCTGTCCCCCTGCCAGGGCCTGATGAAAGCGTCTCGTGCCTGCCTGAAGAAGCTGATGGCCGCGGTGCGCGGTCACGGCAGGGTGGACACGCCCGAGAGCATCGCACAGCTGGACGACATCGCGGACATCACCAAGGACATCAGCCCCAGtgTCGATGACCTGGCCCTCAGTCTGTACCCACCCATGAACTACGCAGGAGTACAAATGAATGCTGCCACCCTTGCCTCGGTCCTGAGGAAAGTGCTCCAGATTACCAGGGCCAGTCACGTGTGCACGGAGAGTGAGTTGACCTGGGTGCAGTTCCTGGAAGGAGCTGTCGACCACAACATGCAGAGAGTCACAGAGCTGACACAGGCCTCGGTGTAGGGCACCAGTCAGCGCCAAGGCCACAGGCCACAGTGCCATGGTCACAGCTGCGGACCAGCTATGGGGGACTCTgagcgtgtgagtgtgtgtgtagacaGTGCTCCCTGTCTTATTAGAAATGAGTGTCCTTAACTCAAATGTTGTCTTTTGCAACACAACATCAACCCCAAAATCTGAGCAGGTTCAAACACAGCAGTTTctggtctgttcttctttttcagaagaaaatgcttttatatggctgggctgtgtgtgtgtgtgtatgtatgtatgtatgtatgtatgtatgtacacgTGTActtaagtgtgtatatataggcacacagtatttaaataatgcttGTAAATGCTTCGGAAAATGCATAGTGATTTCACCCATAAATAATGGATAACTGAAGAAGATTGAGTGTGATGGGTACAGTTTATTAAAAGTAACCAAAGTTATTTAACTGCCACACTGTGTCCCAGCACATCTCTACTGTGGCACCATACCATCACCCAACTGTGGCAGCCACAGGACGCACCCTGGGGTATTAGCTGTTGTCTTAATCTCATTACGCAGTCGAGTCAGAATGACTGTTGTAACAGAATAGCAGGTGAGTCAATAGGGAGTGAAAGGTAGGACCTTGGCTTCACGGCAGATCAATTTACAGGGAAAGAAGCAAAAGAACCCCCTCTGCTCCGTGCAGAGGAGTCTTTAGACACTGAATACACCTTTAATGTGTAAAAGACTGAAGACTTTTTATGTAAAAGGCAAACCAAGTTGGCCGGGACTGCTGGGCACTGGTTTTCTGCTCACTCCAAGGCAGGGGCAGGAAACTACAGGGCTCAGAAGGCAGCAGGGGCGTATGTATGTGCAAAAATTGAGACTTTATTAAGGTTGAAGCACAGCTGTGGCCAAAGTGCTGATCGCACAGTGCTTCAGCACCGCCAGCTGCACCCAATCCACTGATGGCAGACCATCCTGCGCCCACAAGCAGCCGACCTGTCACAGCTGACTCAACAACAGTCCTAGCAACCTGGAAAACCAAGGAAGGGTGTGTGTACGCCCTCGGTCTGAGGaatgcctctctctctgagaacaataaattgattatttgtgatttttctttttccattggCATTATTATCTGTGTATCAGAAATATATAGTTGGATCACCATGCTTTCTTGAAG

Function

GO: NA

KEGG:

id description
K21626 CCNDBP1, DIP1, GCIP; cyclin-D1-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34473 lncRNA upstream 138731 38481297 ~ 38482391 (+) True G27561
TU34465 lncRNA upstream 179051 38441536 ~ 38442071 (+) True G27553
TU34464 lncRNA upstream 181230 38439574 ~ 38439892 (+) True G27552
TU34393 lncRNA upstream 593199 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 603978 38016868 ~ 38017144 (+) True G27489
TU34503 lncRNA downstream 44135 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 164713 38792449 ~ 38834594 (+) True G27648
TU34610 lncRNA downstream 227795 38855531 ~ 38855767 (+) True G27667
TU34617 lncRNA downstream 278318 38906054 ~ 38908182 (+) True G27670
TU34673 lncRNA downstream 426803 39054539 ~ 39055627 (+) True G27708
AMCG00007965 mRNA upstream 16109 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007959 mRNA upstream 50899 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007956 mRNA upstream 144634 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007957 mRNA upstream 197967 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007952 mRNA upstream 450976 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007964 mRNA downstream 8746 38636482 ~ 38661331 (+) True AMCG00007964
AMCG00007970 mRNA downstream 65107 38692843 ~ 38704205 (+) False AMCG00007970
AMCG00007971 mRNA downstream 86025 38713761 ~ 38726766 (+) True AMCG00007971
AMCG00007968 mRNA downstream 130120 38757856 ~ 38767584 (+) True AMCG00007968
AMCG00007969 mRNA downstream 140475 38768211 ~ 38784621 (+) True AMCG00007969
TU34460 other upstream 184527 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 208193 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 451061 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 474272 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 3000321 35611116 ~ 35620801 (+) False AMCG00007873
TU34527 other downstream 65003 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 875343 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1204653 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1428896 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1613576 40241312 ~ 40247238 (+) True AMCG00008036

Expression Profile