RNA id: AMCG00007964


Basic Information

Item Value
RNA id AMCG00007964
length 2197
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00007964
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38636482 ~ 38661331 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCACCTCCCGAGGAGTTCACAGCCACTGCCTGCAGCCTGATGGTGGTGCTGTCCTGAGTTTCCGACTGGTACTGGGAGTAGGGGATCAGGTTGGGGATGAGGAGCAGAGACTGAACTTTCTACAGGCTGAGATGTCCCACGTGGTGCTGAAATGTGATTATGTTGCTCATGCAGAGGACCTGCAGCAGAGTCTGCCAGGGGTGCTTCTCAGTCCATTCTTGGTCTACCATCTGGGCCAGAATAACAACAAGGCCCACCGCACTGATGAAATCAGCAAGGAGCGACTGATCGCCAGGAGGGGACAGGCGTTCTCCATCACCCTGCGCTTCAACCGCACCTTCCGCCAGGGCTTCGACAAACTCCAACTGACAGTGGAGACAGGTACATGGACACTTGGCACAGTCAATCCCAAGGCTCTGGGCTCTGACTCTCGGGGCTCTGAGAACCTGAATGTGAGGGGGGggttaaatgtattacttactGACAGGctgcatctctctgtgtctccagGCCCCCAGCCCTCAGTATCGGATGGCACTCGGTCAGTGTTCGACGTTCCCAGCACGGCAAAGTCCAAATCCTGGGGGGCCACCATCCAGAGCACCCAGCAGAATGAAGTGACCTTGGCTGTCTCCAGCCCCCCCGACGCCTGCATCGGTACCTACACTCTGACCGTGCAGACAGgcatcccccccacctccaacAACATCAACAGGACAGGCTCCTTCATCTTGCTGTTCAACCCCTGGTGCTCTGAGGACGAGGTCTTCCTTCCCCGGGAGGACGAGCGTCAGGAGTACGTCATGAATGAGCACGGCCTCCTGTACCAGGGGCAGCATGATAACATCCGTGCCATGCCCTGGACCTTCGGACAGTTCGAGGACGACATCATGGACATCTGCTTGTGGATGCTGGACTTCAACCCGAGAAAGGGCAACCCTGTGAAGGACTGTGTGGCTCGCAGCAGCCCTGTCTACATCATCCGGGTGCTCAGCGCTATGATTAACTGCAACGATGATAGTGGGGTGCTGgAAAAGGCTAATGATTTCGCCCTTGACATCGACACTCCCAACGTCGACCCCGCCCTCCACATCGACTCCACCCATGTCGACCATACAAACCTGTGGATGTTGTGCAGGAATTTCCATGTGTGGGTGGAGGCATGGATGAGGCGATCTGACCTCTCGGGAGACTACGGTGGCTGGCAGGTTGTGGACGCCACCCCCCAGGAGTCCAGTGAAGGTCTGATGCGCTGCGGTCCAGCTCCAGTCAAGGCTATCCTGGAGGGTCACACCAAAGTGAAGTATGATGTGCCATTTGTGTTTGCCGAGGTCAATGCTGATGAGGTAACCTGGGTTATTCAGCCTGATGGAAGCAAGAGGAAGGTGATGTCCAACCCCAGGTCTGTGGGCATGAACATCAGCACCAAGGCGGTGGGCAAGAACGAGTGCCAGGACGTCACTAACAACTACAAGTATCCTGAGGgttCGGCCAAGGAGAGGCAGGTGTATGAGCTGGCAGTCAAGGGGGGCTGTGACAGACTGGAGCCCAGACCTCAGAAGCCACTGGCCGTGGGACTGAAGTTTGTGCAGAGGAGCAAGCCAATCAATGGCCAGGACATTGCCTTCTCCCTGAGCGTCCGCAGCAACAGCCCCACCGTCCACAGCCTGAAGGTCACCATCACCGCTCACTCCATCTGGTTCAATGGGCTCGCCCTGGCAGAGCTGCTGCGGAAGGAGGAGGACGTGAAGCTGCAACCAAACACAGAGGTTACCATTGCCATCCTGATCCCCTACTCCCAGTACAAGTGGAAAACTCAGGCCAGCACCACCATCAGGCTGCAGGCAATGGCTGTGCCCTCTTCGGGAGCACTGCTTCTCTGGATCcgaaaaaaaaactaatcatGAAGTTCAAAGTGAAGCCCTACAGAGCCGGCAGCAGGAAGCTGGTGGCCAACTTCCACTGCAACCTGTTCAAGAACATCAAGACCTTCCAAGACATCACTGTCAATTGACTTATGACGTATATTCTGCTATTCCTCCCTGTTGTCAAATGCCTGGCACTACCTTTTGCCTCACTGTCTCAGTCAGTGTTGTGCCAAGTTCTGCCCTTGttaaaccacaaaacaaatgtgtaactcTGTGGCTTTGGATTATGTaacttttgaattattatttcattgatATTTAGTGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34473 lncRNA upstream 154091 38481297 ~ 38482391 (+) True G27561
TU34465 lncRNA upstream 194411 38441536 ~ 38442071 (+) True G27553
TU34464 lncRNA upstream 196590 38439574 ~ 38439892 (+) True G27552
TU34393 lncRNA upstream 608559 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 619338 38016868 ~ 38017144 (+) True G27489
TU34503 lncRNA downstream 10540 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 131118 38792449 ~ 38834594 (+) True G27648
TU34610 lncRNA downstream 194200 38855531 ~ 38855767 (+) True G27667
TU34617 lncRNA downstream 244723 38906054 ~ 38908182 (+) True G27670
TU34673 lncRNA downstream 393208 39054539 ~ 39055627 (+) True G27708
AMCG00007963 mRNA upstream 8746 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007965 mRNA upstream 31469 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007959 mRNA upstream 66259 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007956 mRNA upstream 159994 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007957 mRNA upstream 213327 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007970 mRNA downstream 31512 38692843 ~ 38704205 (+) False AMCG00007970
AMCG00007971 mRNA downstream 52430 38713761 ~ 38726766 (+) True AMCG00007971
AMCG00007968 mRNA downstream 96525 38757856 ~ 38767584 (+) True AMCG00007968
AMCG00007969 mRNA downstream 106880 38768211 ~ 38784621 (+) True AMCG00007969
AMCG00007979 mRNA downstream 200196 38861527 ~ 38898891 (+) True AMCG00007979
TU34460 other upstream 199887 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 223553 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 466421 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 489632 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 3015681 35611116 ~ 35620801 (+) False AMCG00007873
TU34527 other downstream 31408 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 841748 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1171058 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1395301 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1579981 40241312 ~ 40247238 (+) True AMCG00008036

Expression Profile