RNA id: AMCG00007965


Basic Information

Item Value
RNA id AMCG00007965
length 2106
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00007965
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38576122 ~ 38605013 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGGAAGATCTGCCGGTGCCCACTCAGGGGCTCCGACAGGAGGATGGGAGATGTCTGTGCCACAGGACACGCTGGAATATTctgcaaaaagcttttttacaatcaatctgaaaaaagaaaatcaaaccatTCTTCATCAACTGAagttaaaatcaaatcaaataatatcccgaattaaaaaaaatgaggCTGAACTTGCAGAAAGCCTTCGAAAAAAGATCAGTTCCTTACTAAAGTCAGATGTCAGCTCCCTGTCCATTGAGGAAATTGCAGGACAAGCAAAAATACTTGGAATTCATATAGATGAGGATCAAGAGCAAAATGCCAAGAAAGCAGCACAGTGCATACTGGCCAcagttgattttgaaaatattccTGAATGCAAAGTAAAAATGCTGCCCTTGCAAGGAAACCTTTGGAAAGAATGGTCCAAATTAGATAAGGAACAGTCAAGACCAAAAAATGCTACAAAAGAAATTACTTTAAGTCAGTACAATGAGAAACTTAGCCAGGACAAAAAATCTGTTCGCAGGAAGCAGGCGGAGCAGGGACCATCACAGGAAATTACAaagattatacattttcttcttgaAACCAAGGGAGttcaaagaatatattttttagaaatgttgAAGTATGACATAGATTTAAAGTCTAGGCAAAAGCTAGCCACATTGagagaagaatacaaaaaattatGTGAGAGTTCAACAGGGTCTCACAAGGATCTTCTTCAAAAGTTGGATAAGCAAATTTCAGAGACCTCCATTGGATTAGAGCATGTGATGCGAGAAATAGGTCAGATTTATGAAATTTGTACTGAACATGGTCAGTGTGCTGCATTATCCCAAGATAAAATTAATCTTTTACCAAATGTAGCTGCTGATCTGCTTTTAGATGGATACCCTTTAGAGCTGCTGGATGGCGATGTAGGGTATGTGCTTATTAACTGGGTGACTAAGAATGTTGGTGATGTATCTGCCAATGATGTGAACATCAGAGATCGTCAAAACCTTGTTGACATTCTCAACAAAATAACTAAGGCTGCAGCCAAAATGGAATTAAAGGAAGGAACTTACTCACAATTCTCTGATGTGATGCATTATGATCCACAAAGGAACACGTTTTACATTCCAGGCCTCATGCAGGGTAACCCTCCAATGGCCTCTGTGAATCCAGGCTACAGTGACAAGGTATTTGCcttaaagaaatatgttttccaGCACATTGAGGAACAAAAAAGAATGCAAGCCTTCTCAACAATTACCGAGTTTACTGAGCATGTTAGGATAATATGGAAAGCTGTTAAAACTGAAGAATTTATCTTTAATTTTCAGAACAGCCTTGTAGCTGTTGCTTACAATGAGGCATCaaaaaaatgttcagatttGGAATGGAGTATAAAGAAGCACTTCAATTCCTGGTTAGAAAAAGCTGACAATCAAATTGCTAACTGTAAAGCTGACTTATTAGACACCATAGCCTCACAACTGAAACATGAGGTGCAAGAGTCAGCTGATACTATGGAAAAAAACAGTCTTCAAAAACTTGAAGACTACTTCAAAAGCAGTGAAGAAAACATTCTCCTGGTGCAGAAGTATAAAGCTGAATTAGTTTCTAACATTAAAGCAATTACTAGATTTATGTTGTTAAATGCAGAAACTGAGTTTGAAGTTTCAGTTCTAAGACAGAAAGAATTGCAGAAATTCAAAATTGCACAACAACAGTATAAGACAGCGATTAAAACAGATAGAATGCGAAAGAGATTTCATGAAGAAAATGATCCAAAGAGAAAACTTGAGAAAATGAAGGACGAATACTTTGATGATTTCAAAGATATGTACTATGAAAAGAATGAAACCCAGAAGCAAGCCAAGAAATTTCCTGTGGCAGAGCAAAGCCCTGGTCCGGTTCATGAGACGCCCCTCTGGGCAGCGATGCGAATGCAGACTGCAGGCTACACAGCTGCCTTCGCCCTGCACTCGATGAGACAGGCACAGCATCAGGCGGTTCAGCCAGCGGCTCTGGCTCCCTGTGCTGTACGGAGGCAGGTCCCTTTAAATACCGTGTTCCTGGCCAGACTCGGCCCACATGCCAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34473 lncRNA upstream 93731 38481297 ~ 38482391 (+) True G27561
TU34465 lncRNA upstream 134051 38441536 ~ 38442071 (+) True G27553
TU34464 lncRNA upstream 136230 38439574 ~ 38439892 (+) True G27552
TU34393 lncRNA upstream 548199 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 558978 38016868 ~ 38017144 (+) True G27489
TU34503 lncRNA downstream 66858 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 187436 38792449 ~ 38834594 (+) True G27648
TU34610 lncRNA downstream 250518 38855531 ~ 38855767 (+) True G27667
TU34617 lncRNA downstream 301041 38906054 ~ 38908182 (+) True G27670
TU34673 lncRNA downstream 449526 39054539 ~ 39055627 (+) True G27708
AMCG00007959 mRNA upstream 5899 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007956 mRNA upstream 99634 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007957 mRNA upstream 152967 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007952 mRNA upstream 405976 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007948 mRNA upstream 489371 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007963 mRNA downstream 16109 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007964 mRNA downstream 31469 38636482 ~ 38661331 (+) True AMCG00007964
AMCG00007970 mRNA downstream 87830 38692843 ~ 38704205 (+) False AMCG00007970
AMCG00007971 mRNA downstream 108748 38713761 ~ 38726766 (+) True AMCG00007971
AMCG00007968 mRNA downstream 152843 38757856 ~ 38767584 (+) True AMCG00007968
TU34460 other upstream 139527 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 163193 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 406061 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 429272 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 2955321 35611116 ~ 35620801 (+) False AMCG00007873
TU34527 other downstream 87726 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 898066 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1227376 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1451619 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1636299 40241312 ~ 40247238 (+) True AMCG00008036