RNA id: AMCG00007968


Basic Information

Item Value
RNA id AMCG00007968
length 7102
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00007968
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38757856 ~ 38767584 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGACACCCGCGGGGGCTGCGTGTAGATAAAGGGCATCCAGAAATAAAACCCTGTGTTCCTTTaattatcaatgtatttgtttttaagaataacACCCTGCCCGGACTGCCAGGATTGAGAGAGAACGGCAGGGGATCCTCGGTTCGTCTCGGCTTTTGGGCGAGTCTGCCCAGGGCTGTCTGTCAGTCCGTCCGTCTGTCAGTCTCGTAGTTCTGTAGCTGTAGAGCTAATTAGTGTCCGGAGTCATGGCAACCAGGCGTCTAACTGATGCCTTCTTGTTAATGAGGAACAATTCTATCCAAAACCGGCAGATATTGGCTGAGCAAGTGAGTACTTTCGACCACCGAGCTCTGAGTACACGTAGCAATGCTGCGGTGAGTCCACTCATCCCGACCGTTGTGCATTGTTGATTTCCCCTCTTTCTcggtgtgcatttgtttgtttgtttgtttgttttggtttattatttgtattgaccTCGACGTGTGTGGAAATGCATTTGGTTTGCATGCTGTAACTGCGTGGTCACTTGTCAAACATTCACCCTATTTCTCACCTGTCTCGGTTacaaacctgtgtgtgtgtgtaggtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgctgctgctgctgctgctgctgctggtggggTCGGGCTCATTGTGATGGTAGCAGTGCAGTTAATCACCAAACACGTAGCTGACATGTTGGGAGTCGTCAGGTGGTACCTCTCTCAGCAGCATGCAGTAGCGCTGCTTTATCCTGTTCGCACCTCGGATGAACCGCGGACGAGCTGTCGGCACACACGCAGGCCGCTGAGCAGTGTCGCCACCCGGGCTGCTCATGTCAGCCGCCTCGGGAATTGTCCAGTCCAGGGCCGCACTGCCGAACGCCTCGGTGCTGCATGCAGAAATACCTCGGCTGTGAGAGGTCAAGTCCCACTGGACTTTGTCTGTAAAATCGTGTCTTGTCACAATTTCCATGCTGCCTTTAGTTATTACACTTGACTTCAAACATAAGCTTCTCTCAGAGAATATATACTCAAtgctttttattgtatgtgtttacATATGTAtagatacaattatttttcataaaggGGTGCATGCTACTGTGGTGCAGTAGTATAAGCATTCTCGGGTTTAGTGCAAACTATTCATTCTGTAGTTGCTATGTGCAGTGGAGTTCTAGAACATGGATGTTCCGTGACCACGCTCTTCTCTGCtgccacagtgcagtgtgtgggggTCACTGCAAGACTGTGGCAGCTAGCCGACATTGGGGCTCTTCAGTGTAAGACTAGTACCAGCCCAGAACAAGGAGGCCTGCCAGCCTCTAAGCCAGTGTGATAGGAGTCCTGCCTGTCTCCAGATCAGTTTAGCTGTGCTCTGCTGTACATTGTGTGCAATGAGGGTTCGTGTAAAGGCTCATCCTTCCCGTATGTGGGCTGTGTTCACGAGTCTCCTGTATGACATCTGTGCTGTTTGAAACCTGTAATACTGTAGATTTGGGTCTGGGAATCAGACACAACATAGGTAGGATGGCCAGTATAGCCACAGAGTCCCTGCTGTTTAGAGTCCCGGGTTAGGACCAGTTACAGGGGACCCAGGGGTGGAAACAGACCCGTGGACAGTGTAGTGTGTAATCAGATGGGGATCCTATGACTCCCCCCCGCAGCCTGGGAGGCTGTGGATGTCACCACTGTGAAAGCCCCTTAACACAGCCCTCCCAGGGACTTGGCTCATCTCTCCTCCCGTCCTGCGGCTTCCGATTTTGCAGTTACATGGATAACTTAATTGTTCtgtttcgtgtgtgtgtgtgtatgtgtgcgtgcgtgcatgcaCGCATTTGTCTGTATGTGGGgtttgctctccctctctctttgccCCATCCCGTGGCCATGGTGGACATGGAGGCCAGAATGTCCACACAGAGGTCATTAACCAATCATTGCCTTCACACCAATCACACTTCCCTCTCTGCTGTCCTCTTTACTGTAATCTCTTCCTCCTGCACACTACGCTGCCGGCCTTTGTGTATCTGTGCTCTGTGCGTGTCAGTCTAGGGCTGCTAGTGACTGCTATGGAGGGCTGGTGTCTCCTTTCCCACTGCCTCCAGTGAGGGAGATGCATTCAGACATTCTCTGCCCTCTGGAGTTTTGGGTGGCAATTTCACAGTGATTCAAAGCTACTGCAGAATGTGTGCTTCTGAATTTATTgacataattgtattattatttaaagtcagAAGCaagatataattatttttgcatcatgatttaaatatcttgctgagcagcagcacacacaATCAGTACAGTCACAGAGACCTGCTAACAGAACTGACTGTGGCTCTCAGCTTGCATTCgttacatattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcttgTGTACAATGTTGTTCTGCATGCAGTTGCACTTTGCTGTATGTTGGCTCTGTGTGGGGTGCAGGACGGGTGAGGGTGGAGTGAGTGAGAGGGGTGGGCGAGGATAGCAGTAACCCAGAGCTCTGTAATGGCGCATGTCTGCAgctaaatgaaaaatgcaatgtgCTACTAAtgttcttggctgaggtgacgATCAGTGCAGGGGGTTGGGCtgtgtgttcttgtgtgtgtgtagtgtgtcaCTGTAGTGTTGATGGcaggtgtgctgtgtgttgaggCCGGCTGTGCAGTGTGGTGTTGAGGTGCTGCTCGGGCTCGGGCTGACTTGCTCTCACTCTCCTGTCCTTCTCACTCCTCTCTTCTCATTGGATGGGGCTCTGCTGGGATCTGCCAATCACCTTAGGAGCTGGATGAGGTACTGTCCAATCACATTCTCTATctccttttatgttttattgttgggGGCAGGGGCCTTCTCTGAACATTGTGTAAAGCTTGCACTCTGTGCTGAGAAAATCTCTTTCTGATTCTGTGATTTACAACTGATTCGTAACCTTTTCCCTATGCCATCATACAGTGTTTTCTGAAGAATACCTTGAAAATACTTGGGACAAATGAGTAGCCCAGCTAGTACTGTGTGGtcattgatgatgatgatgatgattatgattattattaaggaAGAATAGCTGTCACTAGTTTCTGCAAGCTTATAACCAAACCAAACCTTATAGCCAAAGGGGAGCTTAAGCTGTTAGAAAAATACTGAATGCATTGTCTTTGTCTCCAAGCAAACACACCTCAGAACTTggtatattacatttgtttttctatttttttcccccactctccTTGTCTTCACCCCTTACCTCTCTCCCCATCCAACTTCCCtcaaaccccccccaccccccgcctcTCTCCCAGCTGGCTGATGACCGCATGGCCCTGGTGTCAGGGATCAGTTTGGACCCAGAGGCTGCCATCGGGGTCACCAAAAGACTGCCTCCCAAATGGGTAGACGGAGTGGACGAGATCCAGTATGACATCACGCGCATCCGGCAGAAGATGAAGGAGCTGGCCAGCCTGCATGACAAGCACATGAACCGGCCCACGCTGGACGACAGCAGCGAGGAGGAGCACGCCATCGAGATCGCCACGCAGGAGATCACACAGaTGTTCCACCGCTGTCAGCGGGCGGTGGTGGGCCTGCAGCGGTGCTGTGGCATGAAGAATCGCGAGGAGCGCTCCAAGCACTTCTTCGACACGTCAGGTCCCCTGGTGGAGGAAGACGAGGATGACGCGCTGTACGACCGGggTTTCACAGATGACCAGCTGGTTCTGGTTGAGCAGAACACTGTTCTGGTGGAGGAGCGTGAGCGGGAGATCCGGCAGATCGTTCAGTCCATCTCCGACCTCAACGAGATCTTCCGGGACCTGGCGAGCATGGTGGTGGAGCAGGGCACAGTGCTGGACCGCATCGACTTCAATGTGGAGCAGGCCTGCGTCAAAACAGAAGACGGTTTAAAGCAGCTACAGAAGgcAGAGCAGTACCAGAAGAAGAACCGCAAGATGCTGGTCATTTTTATCCTGTTTGTCATCGTCATTGTCCTCATCCTCGTCCTGATCGCTGTGAAGGCCACGTAAtccttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgagacAGTGACCCAGCCTGTACTGCTAACCCCTCTGCTGCCTTGGTTGAATGTGTATTAAGAACTTATTAACAAACGTAAGTAATTAAGTAAGAGGACCCATGCTGATCCCGTTTGCACAGCTAGTACTGTAGACCCAGGAACCCAAGCATGGTTCGTCCCAGTACCAAGCCATAGTCTATATAAACACACTGCCCACTCTCTCCTTGTCTGAGCTGACCCGCCTCAGCACTGTATTGCAGGGAGCCCTGTTTGTGAATCACCCACCCAGGTATCACTGCCCAACCTCTAGCATTCTCAGCCCTAGTCCTAGGtttATCTGCTCAAACAGGCCTCTCAACAACTTAATTGAGACTCATATTACAGAAGCTGAGGCATCCGGACTCTTCAGCAAACTGTCGAGAGCCAGTGAGTCAAGGAGAATTGCAATTGTAACAGAAACTAGTGGGATGGTGGGGGGCGGGATCAGGTCTGTGAAACACTACTTTTGGCCCCACCCAGCCAGGTTGATTAGCCGATTACTGATTTGAATGATCTCGTCAAGAAGCAGGGGGGCCCAGAGAGCTACGCTGGGATGGGTTTGAGGGGGGACGGGGTTAGATTAGAGTCAGACGGACAAAACACAAGCTACAGATTCTGCTTGCCCTTCACTACATTGGAACACACTGGACTCTCCGTGTATGACCTCGTCTCTGTCGTCGTGTTGATTGCAGCCTCCCTCCTGCTTGAGCCATGGTTTGGTCTTGCTCTGTCCAGTTTGGTTTTGTATCTGTGTTTGCCCCTCGTTGGCTTCTTCTCGGGTTGCTGTGATTAGCTTATCTCTGCTGTCAGTCAGAGCTGCTGTGCCTAAGGTATAGCCGTGGCCCTGAATTTTTGGACCGGCATGAGCAGGTCACCCCAGCTCCTGGAGAGCCATGGGGTCTTCTGAACTGCGTtgtctataaaaaaaataataatctaaaaacGAATTAACAAACACAGTTACAGGACTTCACGGACCAACACCTACAAACTGAAAAACTAGGGCCAGGTTCAATTCTTTTTATATCAGTTCGCTTTGTGTCTGATCGGAGTACCATTCTTCTAACTCAAAACACTTATCCtaaaaaacactatttaaacTGGGTCATATCGGTATTCTTTCTTTAAGCCTCTCTGTTTTACTGGGCGTATCCTGTATGTTACACATCAGTCTGTTGGATTGTCCTGAAGCCCTCTTCTTTCTGCCGTATCCTGTGATGAGTGAATAATGTACATCTGTAGACCTGTGAGGAGAGAAGTAACACTTAAAGACATTTCACAGAGGATAGGAGAACCCCCCCAACCTGGGTTGTGGATTGTACGATTTATATGGGGGGGGAAATCAGGTTGGAAATCATCCTCCCTACTGCCCCTGTCTgcttcagtgcagtgtgtggtctctgtttgttgtgttgtgttgctgtgctgttgtgtacCGGCTGAGCTTTTCCCAAGGGTGGCAGCAGcacagtttctgttttttttatttttatttgagatGAAAGACAGTGAAGACTGTCCTGCTTTTAAGACAGACTGTGCctctttttgttcatttgtttgttttgagtcaGATTATATttgatcttattttaatttatttttttctaatcttttttatttttatctttgggggagggggaagagggGAAGTGCAAGTTAAAAACTCAACCGGAAGAGGGCTTGTTCTTCTATTGTATTCCACCATGGCTGGGTTTGATGGGCGCTGCCTGCACAGCAATCCCTCAGAAAACAGCCTGCCCCCTTCACAGCCACGGGACCCGCCAGGCAGCTGACCGGCACAGTCCTGCGCCTGAACGACAGAGACACAGCTGCACTCAGAGGTGTATCCAAAGCAACGCCTTGGACTTGATATCATCTCGTTTGTCTTGAGAGGGCTGGCAGGTCTCTGTGTGATGATGGAGCTCTGCGCGCACCTGGGCCGTGTTGCTTCACTCACAGATTGTTTCTCTGTGGAGGTACCAGCTGTCTCCACTGCGAGACTCCTGAACTGAACCCCCCGGCGCTGGGACCAGAACTGAGAGCAGCCTTAATCATGGCTGCAAATACTACTGAAGGGAATTCTGCATGCCAGGAGAGGCGGGGGGGAGGTTGTTGATTGATGGTTGGTTGGTTGAGTGACACACTCCACTATCTAAATGtagctctcacacacactcgcacttaataataacaatgtaaagAAGATTtgaataaatagaaaatgtcaTTCCATTCCTTCCCAGACCAGGCTGTACTTATACCTTAATGTCATTAAATTCTTAAAGATTGGCTGAAAGAATCCTCACCTGGGCTTTCAGTTAATCTGGGAAGcacatacccccccccccccccccccccccccccccctcctttggttaagtaattaaatcaaattcagtCATATCGTTCATGAAAAATGGACAAAGGATCACTTTCCCAGTGTTTGAACTCTAAAGACTGGCACCTGCAGACCGCAGTCCTCCTGCGTCCGCCCCTCGTCTCAGCGTTGTCTGTGTGGGGCTCCCACAGGATTAAGGACCAAATGTGTCTCCACTGCTCACTTCTCATCTGCCTTTGTCTCTCTCCTGTCGGGGTCCGATGTCATGCTGTTGTGGCctgtaaaaataagtaatggccACCAACCCCCCTCCAGGTGTGATATACattggatatatttttatacctTTGCAAGCAGTTTAAATTCCATTCCTTGTGCTTTAAGTGGATATACTAAAATCTTCTGTTagtggtgtgtgtgagtgagaatCGGAGAATGTCTGTTGTTTGTCGAGTGAGTGACCCACCCTTGTGCAACTGAACAGTCCTAATCCACAGTCCTGAAACGTTGTGCAAAGCATCCTGAACCCAAATGAGCCACCAACTGgagaatgtttaaaacaaaaatataaataaatgaattaaaatattta

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08489 STX16; syntaxin 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34503 lncRNA upstream 28824 38671871 ~ 38729032 (+) True G27581
TU34473 lncRNA upstream 275465 38481297 ~ 38482391 (+) True G27561
TU34465 lncRNA upstream 315785 38441536 ~ 38442071 (+) True G27553
TU34464 lncRNA upstream 317964 38439574 ~ 38439892 (+) True G27552
TU34393 lncRNA upstream 729933 38027380 ~ 38027923 (+) True G27497
TU34587 lncRNA downstream 24865 38792449 ~ 38834594 (+) True G27648
TU34610 lncRNA downstream 87947 38855531 ~ 38855767 (+) True G27667
TU34617 lncRNA downstream 138470 38906054 ~ 38908182 (+) True G27670
TU34673 lncRNA downstream 286955 39054539 ~ 39055627 (+) True G27708
TU34674 lncRNA downstream 291947 39059531 ~ 39059734 (+) True G27709
AMCG00007971 mRNA upstream 31090 38713761 ~ 38726766 (+) True AMCG00007971
AMCG00007970 mRNA upstream 53651 38692843 ~ 38704205 (+) False AMCG00007970
AMCG00007964 mRNA upstream 96525 38636482 ~ 38661331 (+) True AMCG00007964
AMCG00007963 mRNA upstream 130120 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007965 mRNA upstream 152843 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007969 mRNA downstream 627 38768211 ~ 38784621 (+) True AMCG00007969
AMCG00007979 mRNA downstream 93943 38861527 ~ 38898891 (+) True AMCG00007979
AMCG00007981 mRNA downstream 132744 38900328 ~ 38904511 (+) True AMCG00007981
AMCG00007978 mRNA downstream 141701 38909285 ~ 38917976 (+) True AMCG00007978
AMCG00007980 mRNA downstream 153452 38921036 ~ 38925671 (+) True AMCG00007980
TU34527 other upstream 48941 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 321261 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 344927 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 587795 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 611006 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 735495 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1064805 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1289048 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1473728 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 3225275 41992859 ~ 41993377 (+) True G28395

Expression Profile