RNA id: AMCG00007971



Basic Information


Item Value
RNA id AMCG00007971
length 918
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00007971
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38713761 ~ 38726766 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCGCCAGCGGCTTCTGCTTCGGTTACAGGGGCGCCTTGGAGTGTCTGCCTCTGCTGCGCTTTTCATGCTGGCACCATCAGTATTGTCTCTGTGCTTTCAGTGCCCTCAGGCTGGGCCCTGCTCTGACCCCAGCCATTGGGCTCCTCTTGGGGCGGTTGCTGTTGCCACCTGCGGGTTGGCTCTTCCTGCCAGTTGCTGAGCCGTTCCTGTGCCCACCTTTCCTTCCTGTGCTGTGGATCGGGGTGGAGGGGGTAGTGCTGTCTCTCGGGATCAGGCAGCCGCTCGTTCCAATGAACGTATGCTTCAAAGTGAAGACAACTGCACCGCGGCGTTACTGTGTGCGGCCCAACAGCGGCGTGATCGATGCTGGCACGTCCATCAACGTGTCTGTCATGCTACAGCCTTTCGACTATGACCCGAACGAAAAGAGCAAACACAAGTTCATGGTGCAGTCCATGCTGGCCCCTGCTGAAATGACTGACATGGAGGGAGTGTGGAAAGAAGCGAAGCCGGAGGAGCTGATGGACTCTAAGTTGCGATGTGTCTTTGAACTTCCGTCAGAGAACGAGAAAACGCACGACACCGAACCCAACAAGATCGTGTCCTCCAGCATCCTGAAGTCAGAGTCCTCGTCCCTGTCCAAGTCCATGAACGCCTCCCCGGACGAGGGGGAGGTAAAGATCATCGATGAGTGCAAGAAGCTGCAGCTGGAGGTGCAGCGGCTATGGGAAGAGAACAAACAGCTCAGGGATGATGACGGGCTGCGAATGAGGAAGAGCACGGCCATGTCAGCAGCGCACTCCTCCTCTGCTTCCGGCTCCATGGTGAAAGAGGAAGGCCCCAGTACCAGAATGCTCGCCCTCTGTGTATTATTCTTCATCATCGGTGTAATTATAGGAAAGCTGGTCTTGTAG

Function


GO:

id name namespace
GO:0036269 swimming behavior biological_process
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10707 VAPB, ALS8; vesicle-associated membrane protein-associated protein B

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34473 lncRNA upstream 231370 38481297 ~ 38482391 (+) True G27561
TU34465 lncRNA upstream 271690 38441536 ~ 38442071 (+) True G27553
TU34464 lncRNA upstream 273869 38439574 ~ 38439892 (+) True G27552
TU34393 lncRNA upstream 685838 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 696617 38016868 ~ 38017144 (+) True G27489
TU34587 lncRNA downstream 65683 38792449 ~ 38834594 (+) True G27648
TU34610 lncRNA downstream 128765 38855531 ~ 38855767 (+) True G27667
TU34617 lncRNA downstream 179288 38906054 ~ 38908182 (+) True G27670
TU34673 lncRNA downstream 327773 39054539 ~ 39055627 (+) True G27708
TU34674 lncRNA downstream 332765 39059531 ~ 39059734 (+) True G27709
AMCG00007970 mRNA upstream 9556 38692843 ~ 38704205 (+) False AMCG00007970
AMCG00007964 mRNA upstream 52430 38636482 ~ 38661331 (+) True AMCG00007964
AMCG00007963 mRNA upstream 86025 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007965 mRNA upstream 108748 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007959 mRNA upstream 143538 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007968 mRNA downstream 31090 38757856 ~ 38767584 (+) True AMCG00007968
AMCG00007969 mRNA downstream 41445 38768211 ~ 38784621 (+) True AMCG00007969
AMCG00007979 mRNA downstream 134761 38861527 ~ 38898891 (+) True AMCG00007979
AMCG00007981 mRNA downstream 173562 38900328 ~ 38904511 (+) True AMCG00007981
AMCG00007978 mRNA downstream 182519 38909285 ~ 38917976 (+) True AMCG00007978
TU34527 other upstream 4846 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 277166 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 300832 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 543700 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 566911 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 776313 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1105623 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1329866 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1514546 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 3266093 41992859 ~ 41993377 (+) True G28395

Expression Profile