RNA id: AMCG00007975


Basic Information

Item Value
RNA id AMCG00007975
length 1740
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00007975
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38785536 ~ 38790785 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGAGGAGTACTACGGCACGGCGGCCGACTGGGAGGGTCAAGATGGGGCGCTGGAGGACGGGGAGACGGACGGCGAGACGGATGGGAAGGTGCAGGAGGAGTGTCTGCAGAAGTTCTCTAGCCGCGATTACATTATGGAGCCCACCATCTTCAACACGCTCAAGATGTATTTTCAGGCGGGCGGCTCTCCAGAGCATGTGATCCAGCTGCTGTCGGAGAACTACACTGCGGTGGCCCAGACGGTCAACCTGCTGGCGGAGTGGCTTATCCAGATGGgagtGGAGCCAGCGCAGGTGCAGGAGAGAGTGGAGAACCATCTGAAGAGCCTGCTGATCAAACACTTCGACCCCCAGAAGGCCGACTCCATCTTCACTGTGGAGGGAGAGACGCCGGCCTGGCTGGAGCAGATGATTGCCCACACCACCTGGAGAGACCTGTTCTACAAGCTGGCGGAGGCGCACCCCGACTGCCTGATGCTCAACTTCACTGTGAAGCTGATCTCAGACGCAGGGTACCAGGGCGAGATCACCAGCGTGTCCACGGCCTGCCAGCAGCTGGAGGTCTTCTCGCGCGTGCTGCGGACCTCGCTGGCCACGCTGCTGGACGGCGGCGAGGACAACCTGGAGAAGAACCTGCCTGAGTTCGCTAAGATGGTGTGTCATGGGGAGCACACCTACCTGTTTGCCCAGGCCATGATGTCCATCCTGGCACAGGAGGAGCAGGGCGGCTCAGCTGTGCGTAGGATCGCTCAGGAGGTGCAGAAGTCTGCTCACCAACGGGGCCATGATGCCAGTCAGATCACGTTGGCTCTGGGCACCGCAGCCGCCTACCCCCGCGCCTGCCTGGCCCTGGGAGCCATGCTGTCCAAGGGTGCCCTGAACCCAGCCGACATCACTGTGCTCTTCAAGATGTTCAGCAGCATGGACCCCCCTCCTGTGGAGCTGATCCGGGTCCCTGGCTTCCTGGACCTGTTCATGCAGTCGCTGTTTAAACCCGGGGCCAAGATCAACCAGGACCACAAGCACAAGTACATTCACATCCTGGCATACGCGGCCAGCGTGGTGGAGACGTGGAAGAAGAACAAGCGTGTCAACATCAACAAGGACGAGCTCAAGTCCACCTCCAAGGCCGTGGAGACGGTGCACAGCCTCTGCTGCAACGAGAACAAGGGTGCCACCGAGCTGGTGGCTGAGCTCAGTACCCTGTACCAGTGCATCCGGTTCCCTGTGGTGACGATGGGCGTGCTGAAGTGGGTGGACTGGACTGTCTCGGAGCCGCGATACTTCCAGCTGCAGACTGACCACACCCCCGTCCACCTGGCTCTGCTGGACGAGATCAGCACCTGCCACCAGCTGCTGCACCCCCAGGTTCTGCAGCTGCTCATCAAGCTGTTCGAGACGGAGCACTCCCAGCTGGACGTCATGGAGCAGCTGGAGCTGAAGAAGACTCTGCTGGACCGCATGGTGCACCTCCTCAGCCGTGGCTTCGTGCTGCCGGTGGTCGGATACATCCGCAAGTGCCTAGAGAAGCTCAACACAGACATATCCCTCATCCGCTACTTCGTCACTGAGGTGCTGGACGTGATCGCCCCTCCATACACCTCAGACTTCGTGCAGCTCTTCCTGCCCATCCTGGAGAATGACAGCATCGCCGGCACCATCCGTGCCGAGGGGGAGAGTGACCCTGTGGCAGAGTTCATCGCACACTGCAAATCCAACTTCATCATGATGAACTGA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15181 TH1L, NELFD; negative elongation factor C/D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34602 lncRNA downstream 5784 38776161 ~ 38779752 (-) False G27661
TU34601 lncRNA downstream 5784 38777237 ~ 38779752 (-) True G27661
TU34574 lncRNA downstream 17968 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA downstream 17968 38764444 ~ 38767568 (-) True G27639
TU34553 lncRNA downstream 73199 38710852 ~ 38712337 (-) True G27626
TU34611 lncRNA upstream 64763 38855548 ~ 38855777 (-) True G27668
TU34636 lncRNA upstream 115368 38906153 ~ 38907811 (-) True AMCG00007984
TU34638 lncRNA upstream 130185 38920970 ~ 38922688 (-) True G27686
TU34645 lncRNA upstream 133796 38924581 ~ 38927571 (-) True AMCG00007983
TU34831 lncRNA upstream 664255 39455040 ~ 39455858 (-) True G27833
AMCG00007972 mRNA downstream 42493 38733689 ~ 38743043 (-) True AMCG00007972
AMCG00007973 mRNA downstream 92762 38679465 ~ 38692774 (-) True AMCG00007973
AMCG00007974 mRNA downstream 106385 38676674 ~ 38679151 (-) True AMCG00007974
AMCG00007967 mRNA downstream 139554 38635057 ~ 38645982 (-) True AMCG00007967
AMCG00007966 mRNA downstream 172955 38608702 ~ 38612581 (-) True AMCG00007966
AMCG00007976 mRNA upstream 3319 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007977 mRNA upstream 40320 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007984 mRNA upstream 113973 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007983 mRNA upstream 135400 38926185 ~ 38937663 (-) False AMCG00007983
AMCG00007982 mRNA upstream 152050 38942835 ~ 38949522 (-) True AMCG00007982
TU34421 other downstream 620994 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 693658 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1197011 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1214048 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1216252 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 256504 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 263368 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 298137 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 709536 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2225374 41016159 ~ 41017248 (-) True G28202

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064436 True 2553 mRNA 0.45 15 NC_007117.7 49781884 ~ 49801173 (-)