RNA id: AMCG00007979


Basic Information

Item Value
RNA id AMCG00007979
length 7578
RNA type mRNA
GC content 0.60
exon number 54
gene id AMCG00007979
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38861527 ~ 38898891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGGGGACATAGCTGTGGGAATGATCTTCAGGTTGCTGCtgcccctgctgctgctggctgCCATTTCTTTTCGCTACAATGGTCTGTCCTTGGTctacctcctcttcctcctcatcctcccGCTGCTCCCCAACCCTACAGTTGCCTCCATGCGTGGCACAACGGGTCGGTTTCTGCGCTTCATCTGCTACATCAGTGTCAccttcctggctgtgcagtgtgGGCTGCAGATCACCTTCATCTACGTCCCCAGGCAGGGTAAGACACCGCAGCTGCGTAGTACCGCTGTGGACAGCTGCGGGGGGCCAGTGAGTGGGATCTGGGAGTCGGTCCTGTGCCACGTGGGCATCGTACGGTTCAGCGCAGTGGATGGGGGAAACATTGTGCGCCTCTTGGCCCCCGACCTGGGCCTGTTCCTGGCCGGGCTGCTCATCTACAGACTCTGCAGGAAGCTACTGAGGCCCCAGATCCCCATCGCTGCCCACGACAACTGTATCCTGCGCTCAGACACCGAGGTACGGCCAGCGTGCTGCTCTGTTGCGCACTCAGAATTGGTGCACCAGGGTTCCCCCCTTTTGCCAAAGCTGgACCTGCAGGGCTCGGGCTTGGACTCAGAGTCAGAATCGGAGGAGAGCAGTGCTGACACAGATGGGTCGTCATTGGACAGCTCGGACCAGGCCGCTCAGACGGGCGGCAACCAGCCCAAGTTCATCCAGAAGCTGATGGTGTTCGCGGCCGGACTGCGCCTGCTTCTGACCGCTGTCCTGAACACGGCGGGCAAGGTGGTGGTGACTGTGCTGCTGGGCCTGGCAGGTATCATGCTGCCCTCTCTGACCTCGGCAGTGTATTTCTCTGTCTTCCTGTGGCTGGTGTGGTGCTGGGCCTGCCATCGCCCAATCAGCCTGGTTCTCTTCAGCAGCCTGTGTGTGATGGTGGCCATCTTCAGTGCTGGGCACCTGCTGGGGCTCTACCTGTACCAACTGCCATACTTCCAGGAGCTTGTCCCCCCTCAGGACATCTACGCCAGACTGTTTGGCATGACAGCGTTCATCCGTACCTCCATCTCGGACCCGCACCGGCTGGGCCTCCACGGGGACATCACCTGGCCCGTGCTGCTGAACCCCCTGGTCCTGCTGGTGCTGTACTACACCCTGGTGGCTCTGCTGCACAAGTGGGTGCACATCCCAGCAGAGGTGGCCCTGCCCCAGTTTGAAAACAGACTCCCAGAGGGGCGCCATGGTCTGCGCAGGATGCTGTGGGCGACCGGAAACGAAAAGAAGGAGCTGCTCACCAGTATGGATGAGGACAACAGCATTTCCAATGAGGTATTTCCTCCCAaggaggaggaggaagaagaggagaaggagcaggaggaggaggaggaaggggtcTCAGAGGGCCTCACCGAGAGCGAGCCCGCTGGGCCCAGCGGGTTGGTGCTGTTCGGACAGTTCATCATGAAGCAGAGCTACGTCAGCGCCCTCATCGTCATGATGGTCTGGAGTATCACCTACAATAGCTGGCTGACCTTTGTGCTGCTGGTGTGGTCCTGCGCCATCTGGATGCTGCGCGACCGCCGGCGCTACGCCATGCTGAGCGCGCCCTTCCTGGCCCTGTACGGCACGGCGCTGGTGCTGTGTGCCTTCGTGAGTGGACTGCGGCTGCAGCCTGATGAGCTGTACCCGGGCCTGCCCCCTGCCGTGCTGGTGGACTTCGACCTCAGGGGCCACCCCACGCCCTGCACACACCTGGGCGCTAAGGTCTCCTACGCCTTCACGTTCTGGCTGTTGCTGCGTCAACACCTGACAGAAAAGCAGGAAGAGCAGCGCCTGAAGCAGGAGCCCCTGGAAGAGATCAAAGTGTCAGAGTCAGgaCAGGACGACAGCCCTGTGACCCTGATGGAGGTCCTGGGGTCCCTGGTGAAAAGCATGCTGGTCAAGTACTGGATCCTATTCTGCTGCACCATGTTCTTTGTGGTCAGCTTCTCGGGCAAGGTGGTGGTCTACAAGATCCTATACATCATGCTGTTCCTCTTCTGCGTGGTGCGGTATGATGTTTGGCGCCGGGTGTTAAAGTACTTCTGGGCGGTGGTTGTGGGCTACTCCATGGTTGTGCTCATCGCCATCTACATGTACCAGTTCAAGACCGTGTCCGGACTGTTCCGGCAGATCATGGGCATGTCAGAGGAGGGcctGCGTGACCTGGGTCTGGAGCAGTATGACACGGTGGAGCTTTTTGCCCGGATTCTGTTACCCTCCAGAGAAGACCTGAGAGCCACCGTGGACGTGATCATGGATGCcattaaggaaaacattgaaaaactTCAGAAAAGGCTGGCCAAGGAGCAGCAGAGTGGCGGCAGTCTGGACACCCTGGACAAGCCAGGCCTCTCTGAGCCGGACGAGGCTTCGAACGCGGGCACCGAGAAGCCGCTGAATCAGTGGGTGCTGGTAGTGGACCGGGCTGGACTGCTGGTGCTGCAGGCCCTGTGGgggctgcagcagctgcaggagctgtGCTGGAGACTGCTGGAGCTGCACAGCCTGAAGATCGTCTCTACAGGCATCATCTGGGTCACATTGAGAGAGGTGTCTCTCATGAATTACCTGTTCGTGGTGCTCTGGTGTTTTGCCCTGCCCTTCTCGCGCATTCGCCCCCTGGCCTCCAGTGTTTCCACAGTGTGGGCCGGCCTCATGGTGGGGCTGGTACCAGCGAACGGCAGTCTGTCTCCGGGGGGCAAcatggaggagctgctgcagaggtcCGTGCTGTACATGGAGCCGGTGGACCCGGCGCTGTGGTGTGTCCAGCGGCACCAGCTGTACTTCCGGCTGAGGAACGGCCTGCAGATGCCTGTCACCGGCACGCTGTTCACCGGCATCACCCGGCAACACCTGGACCAGGGCTTGCTCCCCTGCCTCAAGTACTTCATCAACTACTTCTTCTACAAGTTTGGCCTGGAGCGGATGGATTTCTACGCCCTGCTGCACTCCTGTGCCCTGATTGCAGTCCTGTCACGCCGGCGCCGGAAGTCCATCGGCGAAGTGTGGCCCAAATACTGCTGCTTCACTGCCAGCCTCATGGTCTTCCAGTACCTGCTGTGCATCGGGATTCCCCCGGCCCTGTGCTACGatTACCCATGGAGGACCTCTAGGCAGGCTCTCAGCTCCAACCTCATCAAGTGGCTCTACCTGCCCGACTTCGCCAGGCAGCCCGACCCCATCTTCATCATCTatgACCACATGCTCCTTCTGTGCTCCTGCCTGCAGGGGCAGGTGTTTATGGAAGAGAACACAGTAGCAGTCCGTCTCCTGGCAGGGGACAATCTGGAGATCAGCCGCAGTCTGGATTCCCGAACCCTCAGCCAGTACACCCCCGTCGGCAACTTCCTACACTGCAGGTCTTACCTGGACATGGTCAAAGTGTTTGTGTTCAGCTACTTCTTCTGGCTGGTGCTGTGCCTCATCTTCATCACCGGCACCACGCGCATCAATATCTTCTGCATGGGCTACCTGGTGGCCTGCTTCTACTTCATGCTGTTTGGAGGCACCCTGCTGCTGCAGCCGGTGCGGCACATCCTGCGACTCTGGGACTGGCTCATCGGCTACACCTGCCTGGTCATCGCCATGAAGAACCTGCTGTCTCTGGGGTCCTGTGCCTACCTGGACAGCCTGCTGCAGAGAGGCTGCTGGTTCATTCAGACATTCAGCATGTTCTGCACCATCAAGGGCTACAACATCCCACCCCCTACTGGCAAGTGCGAGCTGCCAGAGGGTGAGGCGGGCATTGTCTGGGACGCCATCTGCCTAATGTTCCTCCTGGCGCAGCGCAGAGTCTTCCTCAGCTACTACTTCCTGTACGTGGTGTCTGACCTGAAGGCCTCCAAGATCCTGGCATCCAGGGGCGCCGAGCTCTTTGAGGCCAAGGTAAAGAAGCGCATCGCGGCTCGGCTGGAGCTGGAGAAGAAGTCTGTGGAGACACTGAAGAGACAGATGGAGAAGATAAAATCCAAACAGAAGAGGTTTGAAGGGGGTGGGAGTGAGAAGGGGGACAAAAGTGATAAAAAGGAGTGGTGGCGGCCATGGGTGACCCACTCCTCCATGGTGCGCAGTGGCAGCTACTACCTGTTCGAGTCGgacagcgaggaggaggaggaggaccacgaggagaaggaggaggaaccCCCCCCCAAGAAGAAAACCGCCTTTCAGCTGGCGTACGAGGCCTGGATGACGAGCTCCAAAGCAGCCCTGGAGGGACACAAGAAAGAGGAGTCCACcctgaggagggaggagaggaggagagccaGGCAGGAGCTGCACAGACAGCATGAGAGCATGATCCAGCGTCTCATCGATACAGTCCGGTTCGCCCGGGTCTTCGTCCACTCCCTCCTGGACGACCTCACAGATGGCCTCAACTCCTTCTGCAAAGACAACCTGGACATCtccaaggtgctgcgcttcgaGAGGGCCATGCTAGACCAGGAAATGAAGAAGGGAAAAGATGCTTCCCAGGACACTATCAGGCAGTTCTACCAGAGCAGACTGTCCAGGCAGGCCATGCTGCAGTCCCCCGAGGACCCGGAAGAGCCCGAGCACCTGCCATCCTCCCCGTGTGGCTACAGCAAACTGCACAGCTCTGACTCCAAGCTGtcctggagcagcagtgtgtcCAGCTGCTTGACTGACATGACCATGCTGGGCTCACGCCAGCCCACGCAGGAGGACCTGGACGAGGAGCTGCCGCCAGGCCCCCCTGCCCTCCCTGCACCCCCTGCTGGAGACCAGCTCCGCCGCAGACTCCTGAAATCGACCAACATCGACCTGGCCTCCTTTGACACAGAGAGCCTCGGAGCAGGcAGCCTTGTGGAGGTCGTCTtggaggagaaagaagaaagggaTGAAGATAGacaggaaggagaggaggaggacgatGATGTGGATGGTGAACCCCAGCCGCAGCCCCACACCTTGGTCCTGGGCTCTGGTGGGGATCCCCTGGATGAGACGGAGAAGCTGCAGGACCCAAGACCGCTCACCCAGGAGACGCGCGCCCTAACTGCCAGCGAACTGCTGCTGAACAAGATGTTTGAGAACCAGGAGATGGAGGAGTCGGACAGGTTCTACGAGGTTCTGCCCCAACCAGTGCCCCTGCTCTTTGCGCTCTACAACACAATGGTGTCCAAGTCTGAGATGCTGTGTTACTTCGTCATCATCCTCAACCACATGGTGTCGGCCTCCCTGCTCACACTGGTGCTGCCAGTGCTCATCTTCCTCTGGGCCATGCTGTCCcTCACAGTGGTTGTCAAGTATTTCTTCCAGTTTGGCTTCTTCCCCTGGACCAGCTCAGCATACCGCGGCATCAACGCGGAGCGCCCCTTCGCCCTGCCCAACATCATCGGGGTGGAGAAGAAGGACGGCTACAAGGACGGCTACGTGCTCTTCGACCTGGGGCAGCTGTTGGCCCTGTTCTTCCACCGGTCCATCCTGAAGTGTCACGGCCTGTGGGACATGAAGGAGGTGGAGATGCCCGACTTCTTCAAGAAACTGAAGCGCAAGACACAGAAGCAGCGGGGGGGCGGAGAGCGGGGGGGTAGGGCCGGGCGCAGGCTGCCCTTTCTGCAAAGCTCCACGGGCTCCCTCTTCCAACGCAGGAAGACACATGACAGCACAGACGGCAATGGCAATGTGGAGCCGCCGCAGCGCGAGTCCCGCAAGAGGAAGCGGCGCCATTCGAAGATTCCCCTGACCCGGAAGGAGATAATGAAGCAGAAGGTCCGGGAGAAGATGCTGGAGCTGAAGGCCAAGACTGTGGAAATagCTCTCCACATCTACCTACCCGTCAGGCAGTTCTTCTACGACATCATCCACCCGGAGTACAGCCCCGTGTGCGACGTCTACGCCCTCATGTTTCTGGTCGACGTTGTGAATTTCATTGTCATCATTTTTGGGTACTGGGCTTTCGGAAAACACAGCGCGGCGGCCGACATCACGGAGTCCCTGTCCGAGGACCAGGTGCCCGAGGCCTTCCTGGTGATGCTGCTGATCCAGTTCGGCACCATGATTGTGGACCGGGCCCTGTACCTGCGCAAGACCCTGATGGGGAAGTGTGTGTTCCAGGTGGTTCTGGTGTTCGGGATCCACTTCTGGATGTTCTTCATCCTGCCGGGGGTCACGGAGAGGAGGTTCAACAAGAACCAAGTGGCCCAGCTGTGGTACTTCGTAAAGTGCGTGTACTTCGGACTTTCCGCCTACCAGATCAAGTGTGGCTACCCCAACCGCGTCCTCGGCAACTTCCTGACCAAGAACTACAACTTCCTCAACCTGTTCCTGTTTCAGGGGTTCCGCCTGGTCCCGTTCCTGACGGAGCTGCGTGCGGTGATGGACTGGGTCTGGACAGACACCACACTCAGCCTGTCCAGCTGGATTTGTGTGGAGGACATCTACGCCAACATTTTCATCCTTAGGTGCTGGAGGGAGTCTGAgaagAAATACCCCCAGCCTTCAGggcagaagaagaagatggTGGTGAAGTACGGCATGGGCGGCCTCATCATCTTCGCCCTCATCTGCATCGTCTGGTTCCCCCTGCTTTTCATGTCGCTGGTGAAGTCCGTGGCTGGGGTGACCAATCAGCCGTTGGACGTCTCCATTCAGCTCAGCATAGGGGGGTATGAGccGCTGTTCTCCATGAGCGCCCAGGAGCAGAACCTGCAGCCCTACTCCCAGTCCGCCTACAACCAGATGACCAAGCAGTACGCCACGCATCCATCAGCCATGCAGTTTATAGTGAACTACATGCCGGAGGACATCGTCGTGGCGAGAATCAAGAGCGACGCCAGTCTGCTGTGGAGCATCAGCCCGGCCAGCCGAGCCGCCATGGTGCAGGAGCTGAGCAACTCCTCGCACATTTACATCACCCTGCGCTGGACCCTGCTCAGGAACGCCTCTCTGGTGATGAACGCGCAGACAGCCGGCGAGCACACAGTGAAATACGAGGACAAGGGCATGAGGGACGAGATCGTGCAGATGCTCCAGGGGACGCGCAGCCAGCCTGTgaTCCTCTCTGCACTGCTGCCCAAGTTCATCCCCCACAGCGAGGGGACGGAGGAGCAGCAGAGCCTGGCGCTGTTCCGGCCTGTGGCGATCCGGCTGCAGACGGCGAAGGCCAGTGTGCCGGGGGAGCAGGCACCGCAGTGGTGGGTGGTGCAGGAGTGCCAGCCAGGCCGCAGCCTCGCCAGCTGTCACAACATCGAGGTGGTAGTCTTCAGTGACAAGGTCAGCCCCTCCAGCCTGGGCTTCCTGGCAGGCTATGGCATCGTTGGGCTGTACATGTCGGTGGTGCTGGTGATCGGGAAGTTCGTGCGGGAGTTCTTCAACGGGATCTCGCGCTCCATCATGTTCGAGGAGCTGCCCTGTGTGGACCGTGTGCTGAAGCTCTGCACGGACATCTTCGTGGTGCGGGAGACCGGCGAGCTGGGCCTGGAGGAGCAGCTCTTCGCCAAGCTCATCTTCCTGTACCGCTCCCCCGAGACCATGATCAAGATGACCCGGGAGAAGGAGAGTGACTga

Function

GO: NA

KEGG:

id description
K22128 PIEZO1_2, FAM38; piezo-type mechanosensitive ion channel component 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34610 lncRNA upstream 5760 38855531 ~ 38855767 (+) True G27667
TU34587 lncRNA upstream 26933 38792449 ~ 38834594 (+) True G27648
TU34503 lncRNA upstream 132495 38671871 ~ 38729032 (+) True G27581
TU34473 lncRNA upstream 379136 38481297 ~ 38482391 (+) True G27561
TU34465 lncRNA upstream 419456 38441536 ~ 38442071 (+) True G27553
TU34617 lncRNA downstream 7163 38906054 ~ 38908182 (+) True G27670
TU34673 lncRNA downstream 155648 39054539 ~ 39055627 (+) True G27708
TU34674 lncRNA downstream 160640 39059531 ~ 39059734 (+) True G27709
TU34734 lncRNA downstream 307490 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA downstream 307490 39206381 ~ 39208293 (+) False G27760
AMCG00007969 mRNA upstream 76906 38768211 ~ 38784621 (+) True AMCG00007969
AMCG00007968 mRNA upstream 93943 38757856 ~ 38767584 (+) True AMCG00007968
AMCG00007971 mRNA upstream 134761 38713761 ~ 38726766 (+) True AMCG00007971
AMCG00007970 mRNA upstream 157322 38692843 ~ 38704205 (+) False AMCG00007970
AMCG00007964 mRNA upstream 200196 38636482 ~ 38661331 (+) True AMCG00007964
AMCG00007981 mRNA downstream 1437 38900328 ~ 38904511 (+) True AMCG00007981
AMCG00007978 mRNA downstream 10394 38909285 ~ 38917976 (+) True AMCG00007978
AMCG00007980 mRNA downstream 22145 38921036 ~ 38925671 (+) True AMCG00007980
AMCG00007986 mRNA downstream 105110 39004001 ~ 39012851 (+) True AMCG00007986
AMCG00007987 mRNA downstream 152071 39050962 ~ 39052920 (+) True AMCG00007987
TU34527 other upstream 152612 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 424932 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 448598 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 691466 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 714677 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 604188 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 933498 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1157741 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1342421 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 3093968 41992859 ~ 41993377 (+) True G28395

Expression Profile