RNA id: AMCG00007980


Basic Information

Item Value
RNA id AMCG00007980
length 1530
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00007980
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38921036 ~ 38925671 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCCTGCGGGCTGGGGAAGACCATTTAAATCAGTGAATTCATAAAATTGGGTGGATTATTTAgcagattcaaaacaaaacGTCTTTGTTAGACGATAAAACACTGATTTCCAGACGATAGGACGGGGGAGGATTGTTCGCAGGAGGGGGATATTCAGACCCTTTCATCCTTTGGCCATCATATTCAGAGTGACATGGATGCAGTGAGAACCGGGAAGCCACTGTCTGGTTATGGGAAGATGAGTGGTGACGGACCCAAACGGGTTCCCGTGTCCCAGAGCCGGCAGGGAGCAGCAGTGACCCCTTCTCAGCGTGTGTTGGGCGTGTCCAATGGACCTCAACGAGTCCAGCGCCCGGTAGGGCAGAACAAACCCCTACAGACCCCGGCCCCCCGTGCCAAGACCCTGAACACCTCCAACCAGAACACCCCCCTGCCTGCACCCTCGCAGCCTGAGCCCAAGCCCAagagccagccagccagtctCCCTGTGCATGCTCCTGCAACCCTTGCTGCTCAGGAATCGAGCAGGGCCCCCGAGCCTCCCAAGCAAGAGAAGACTACTGATAAACCTGCAGCTACTGAACTGACCAGCAACTCTGGTTCCAATAAGAAGCGGTGGACGCTGGAGAACTTCGATATCGGCCGGCCTCTGGGCAAGGGCAAGTTCGGGAATGTATACCTGGCCCGGGAGCGCCAGTCCATGTTCATCCTTGCCCTGAAGGTGCTCTTCAAGAAACAGCTTGAGAAGGCAGGTGTGGAACACCAGCTCAGGAGGGAGGTGGAGATCCAGTCGCACCTCAGGCACCCCAACATCCTGCGCCTGTACGGGTATTTCCATGACTCGTCGCGGGTGTACCTCATCTTGGAGTTCGCGCCCAAGGGGGAGCTGTACAGCGAGCTGCAGAGATGTGTGCGCTTCGATGAGCAACGCAGCGCCAAGTATATCACTGAGCTGGCCGACGCGCTGCAGTACTGCCATTCCAAGAAGGTCATCCACCGGGACATCAAGCCCGAGAACCTGCTGCTGGGCGCCAACGGGGAGCTGAAGATCGCGGACTTCGGCTGGTCGGTCCACGCGCCCTCCTCCAGGCGGTCCACGCTGTGCGGCACTCTGGACTACCTGCCACCCGAGATGATTGAGGGGCGAACGCATGACGAGAAGGTGGACCTATGGAGCCTGGGCGTGCTGTGCTACGAGTTCCTGGTAGGGACGCCCCCCTTCGAGACCAAGAGCCACGAGGAGACCTACCGCAAGATCTCCAGGGTGGAGTTCAGTTACCCGGAGTACGTCAGCGCAGGGAGCCGGGATCTGATTGGCCAGCTGCTGAAGCACAACCCGGCGCAGCGGCTCCCCCTGCAGGGTGTGCTGGCCCACCCCTGGTCGGCCAACCCAGCACCAGCGTTAGCCAGTGAAGCGGCAGTTGCTAAGACTGACCTTCCTGCCCCTGCCACCCACCAGAGCTCAAGACTACCTAGCTCTGAAGATGCCCCTGGCCAGGGCAGGGGGTGCGGCTCCTTTCTGATGGAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K11481 AURKA; aurora kinase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34617 lncRNA upstream 12854 38906054 ~ 38908182 (+) True G27670
TU34610 lncRNA upstream 65269 38855531 ~ 38855767 (+) True G27667
TU34587 lncRNA upstream 86442 38792449 ~ 38834594 (+) True G27648
TU34503 lncRNA upstream 192004 38671871 ~ 38729032 (+) True G27581
TU34473 lncRNA upstream 438645 38481297 ~ 38482391 (+) True G27561
TU34673 lncRNA downstream 128868 39054539 ~ 39055627 (+) True G27708
TU34674 lncRNA downstream 133860 39059531 ~ 39059734 (+) True G27709
TU34734 lncRNA downstream 280710 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA downstream 280710 39206381 ~ 39208293 (+) False G27760
TU34770 lncRNA downstream 340751 39266422 ~ 39266673 (+) True G27781
AMCG00007978 mRNA upstream 3060 38909285 ~ 38917976 (+) True AMCG00007978
AMCG00007981 mRNA upstream 16525 38900328 ~ 38904511 (+) True AMCG00007981
AMCG00007979 mRNA upstream 22145 38861527 ~ 38898891 (+) True AMCG00007979
AMCG00007969 mRNA upstream 136415 38768211 ~ 38784621 (+) True AMCG00007969
AMCG00007968 mRNA upstream 153452 38757856 ~ 38767584 (+) True AMCG00007968
AMCG00007986 mRNA downstream 78330 39004001 ~ 39012851 (+) True AMCG00007986
AMCG00007987 mRNA downstream 125291 39050962 ~ 39052920 (+) True AMCG00007987
AMCG00007985 mRNA downstream 134976 39060647 ~ 39069306 (+) True AMCG00007985
AMCG00007991 mRNA downstream 178504 39104175 ~ 39112999 (+) True AMCG00007991
AMCG00007998 mRNA downstream 312377 39238048 ~ 39239628 (+) True AMCG00007998
TU34527 other upstream 212121 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 484441 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 508107 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 750975 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 774186 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 577408 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 906718 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1130961 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1315641 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 3067188 41992859 ~ 41993377 (+) True G28395

Expression Profile