RNA id: AMCG00007982


Basic Information

Item Value
RNA id AMCG00007982
length 4087
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00007982
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38942835 ~ 38949522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCCTCCGTCTTACTTTTGTTGTCGTTGGCCTTTTTTTtccatcccccctcccccctcctcgTCTTCGGGTGCGAGAGCAGAGCTGCAGGTGCGAGCAGGATGCAGGGGCCAAGCACCGGAGTCTGAAGGTGACATGAGCCAGGGGATTACGACCAAGAACAGGCGCACTTTCAGCAAGAATTGGAGATAACAACTGAAGAGAACTCACTTTCGGGGATTCTTACAGTTTCGTCAGATGATTTTATTTGCTATCCAAAAAGAACAATCACTAATATTATAGAAAATAGAAATTCTACAACACCAACCGcacaatataatatttcaaatcaataataaacaacaacccTGTCTATATCTCTATTGATAATTAGCTATATACaaagattagattagatttacAACTGAGCAACGATGGCAACCTTAATCCGAAACAAGCTTTCGAACAAGCTCTCCAATGCAGCCACCACGGTCAGCAACAAATCCCAGGCCAAGGTGAGCGGCATGTTCGCCCGCATGGGCTTCCAGGCGGCCACAGACGAAGAGGCGCTAGGTTTTGCCGTTTGCGATGACTTGGATTATGACCACAGGCAAGGTCTGCAAATGGACATCCTAAAGACGGACGAGGTTGGCGGGGAGCCGGGCGGAGATACTGGGGTGGAAGGGGACAGCCACTACCAGAGGGACGGCACCGGTCCCCCGCCCTCATCGTCCAAAGACGACGGGGTTTGCGCCGAGCTGGAGGCCCAGGACAGGCCTAGAATTACCGCGTGGGAGGCGGGCTGGAATGTGACCAATGCCATACAgGGGATGTTCGTCCTTGGTTTACCCTACGCCATCCTCCACGGCGGATACCTCGGACTCTTTCTCATTATCTTCGCGGCGGTAGTCTGCTGCTACACCGGCAAAATCCTAATCGCTTGCCTGTACGAGGAGAACGAAGACGGCGAGCTGGTGCGCGTCAGGGACTCGTACGTGGACATCGCCAACGCCTGCTGCGCGCCCCGCTTCCCCTCGCTGGGCGGCCGTGTGGTGAATGTAGCCCAGATTATCGAGCTGGTGATGACGTGCATCCTGTACGTGGTGGTGAGCGGCAACCTCATGTACAATAGCTTCCCCTCGCTGCCCGTGTCCCAGAAGTCCTGGTCCATCATCGCCACTGCTGTCCTGCTGCCCTGCGCCTTCCTGAAGAACCTGAAAGCTGTGTCAAAGTTCAGCTTGCTCTGCACCCTGGCTCACTTTGTCATCAATGTCCTGGTCATCGCCTACTGCCTCTCCCGGGCACGCGACTGGGCCTGGGACAAGGTCAAGTTCTACATCGATGTCAAGAAGTTCCCCATTTCTATTGGCATCATCGTGTTCAGCTACACGTCGCAGATCTTCCTGCCCTCGCTGGAGGGCAACATGCAGAAGCCCAGCGAGTTCCACTGCATGATGAACTGGACCCACATCGCCGCCTGCATCCTCAAGGGGCTCTTCGCCCTAGTGGCTTACCTCACCTGGGCTGATGCCACCAAGGAGGTCATCACGGACAACCTGCCCTCCACCATCCGGGCGGTGGTGAACCTCTTCCTGGTGGCCAAGGCCTTGCTGTCATACCCTCTGCCCTTCTTCGCTGCGGTGGAGGTGCTGGAGAAGTCCCTGTTCCAGGACGGAGGCCGGGCCATCTTCCCTGACTGCTACGGTGGTGACGGCAGACTGAAGGCCTGGGGCCTGTCGCTGCGGTGCGGCCTGGTCGTGTTCACCTTGCTGATGGCCATCTATGTGCCGCACTTCGCCCTGCTCATGGGGCTGACGGGCAGCCTGACGGGGGCTGGGCTGTGCTTCCTGCTGCCCAGCCTGTTCCACCTGAAGCTGCTGTGGAGAAAGCTCCTGTGGCACCACGTGTTTTTCGATGTCGCCATCTTTGTTATTGGAGGTATATGCAGCATTTCCGGCTTCATTCACTCCATGGAGGGGCTCATAGAGgcttacaaatacaacattgaGGACTGAGGGAGTGGGGGAAGAGAACCGGATGCAAGCACACTTACACTCACATTCAAAGAGGTCGCTCCGtcacaagcacacacatgcacacacacacgcagatatgcacacagacagacagacattcatTCACCCACTCACTcatgaatataaaaacacacacacacacacacacacacacacaaccataaCCAAACACAAGATAAAATAGACAAcacataacaatacaaaacgaacaaacaaaaagcagaaacatttttttaaaacgaACATATCCATCTTTTTTTGTGGAGTATGGgtttacagaacaaaaaatcAGAACTCAACTAACACAGACTACACGTCATTCATACCCACTTGCTAACTGAAACTGTCAAACAAAATGGGTGTTCAACACATTTACAACTTCCccgtttatttatgtataattatgtttatgtttattagtATGATTATTAATAACGTAAAATCATATCACATATGGGTGATGTCGAGGCAGTGCACTGGGACGCAGCTCTGTTTCCAGATCGATAAAGCACAGTAACATTATGCAATCTGGAACTTAACGACTGCCCGGGATGCGCATAGTTGAATAATTGAATTTCTGCGTCACAGCTTTAGAACAAATTGCAGTGTTGCGTCAGGAGGAGTTCAGCCAGGACCTGGGCTAGTCGGCTACACGTGTTGCATATCGCAGTATTTTGTGTGCCAAGTGGGAACCATGGCAATAACCCCCCCCTTCCAGCCCCACACATACACTGATAAATATCTACTGGAGTGTACATAGCCGTCGATATAAGGACCAAATGGCAAAAACCTTACAAAACGGCCTTCTGGtttgtaaatacaataacaaaaagagagCAAGACAGAGACCATATTTTATCCAAAGCTACATATTGAGGCAAATTATTTATGCaaagctatatttatttattaaattctgCACAACGGTGTGGCAAAAAGGGGAAAGCTGAGATTAAGAAGCTATTccgtcttttgtttgtttgtttgttaaagtttttttttaattgcctacAATTAAAtgatacataaacaaacaaatcgaGCACTAGACAATGCAAGAATGACTATgctaaattataaattatatttaaaatatgctttaaaaaaacaagcgGTTACACGATATTGTTTCGCGCGTTGGGCcttctataaaacaaataaataataataataaaatgcgcGCACAAACACGCACACCAATTGCAAATGAAGATTCAAAACTTAAGAACAACgcttaagaaacaaacacattaaataattacatacacacatgcataaatgcctacatacatacataggtaGATAGTTAGATAGATAGTTAAAACGGTCTCTAGGTCGCTGGTTTTACTGTCATATCTACTGTGTAAAGACGCAAGAAGCGACAGGGCTCCTGATACAGATCCGCAGCTCCCACAGCGGCTCCGTACAGAGGGGGGCGTCGGATAGACATCATCAGATATAGAACATCCTTATTCCGCCAAAGCACAATTAATAAAGGACAGGGCCAACggaacacattaattaatataacagAAGGACGCATACAGAAAAACACCGCTATATGATCCcttctgcaaaaaaatattattctacACTCACGGACATCCGACTGCGAATAATGTCCTTAACTCAATTTGATTgccacttatttatttatgtacacacatttctgtattgattaatttattatttgttaattgaaaTGGTTGTAATTGttaatatctatttatttttatattttgggaTGGTCTCCAACGAGCCTCTGTTTTTGCagctcaaatgttttttgttctcaatttaaaagagggagagagagatatcaTTAAAAGACGtgaaagaagaggaaaaatacGAAGAATATGACAAAgtcaacaaataaaaatcaaaaacaagcataaagacatttttcattatgtGCAATCCAACGGGTCCTGTGGAGGTGTTATAAAACGTATGTGTGGTGTTATTGTGGTTTCAAAAAAGATGGAATGTATATCacaaaaaatatctttaaacaTATAtcgtggaaaaaaataatatattgaagaataaagaaataagtgAAACAGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 15264 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 20147 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 35024 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 87058 38855548 ~ 38855777 (-) True G27668
TU34602 lncRNA downstream 163083 38776161 ~ 38779752 (-) False G27661
TU34831 lncRNA upstream 505518 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 814408 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 841024 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 892809 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 892809 39842331 ~ 39847044 (-) False G27949
AMCG00007983 mRNA downstream 5172 38926185 ~ 38937663 (-) False AMCG00007983
AMCG00007984 mRNA downstream 35853 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007977 mRNA downstream 106698 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007976 mRNA downstream 125103 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007975 mRNA downstream 152050 38785536 ~ 38790785 (-) True AMCG00007975
AMCG00007988 mRNA upstream 27393 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007990 mRNA upstream 83265 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007989 mRNA upstream 121058 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007993 mRNA upstream 139035 39088557 ~ 39091895 (-) True AMCG00007993
AMCG00007992 mRNA upstream 164189 39113711 ~ 39150259 (-) True AMCG00007992
TU34421 other downstream 778293 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 850957 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1354310 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1371347 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1373551 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 97767 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 104631 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 139400 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 550799 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2066637 41016159 ~ 41017248 (-) True G28202

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064595 True 3495 mRNA 0.48 2 NC_007117.7 60142619 ~ 60147517 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_18540426_18543271.mRNA True 2787 mRNA 0.52 2 CI01000340 18540261 ~ 18544300 (-)