RNA id: AMCG00007983


Basic Information

Item Value
RNA id AMCG00007983
length 1612
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00007983
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38924581 ~ 38937663 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAAATTAAagatcagcaaacaaaaactacagTTTCACCGTCTGCTTCCCCACTGCCTGGATCTCACTTTCGCCGCTCCTGCTAGGTCACACGGGAACACAAGCGTCACCCACCTGGTTCCCAACCGCTGCACTGCAGAGAGCTCGTGATCTGAGCAGACAACTCCTCGAGATGTGGCAATCTCTGCTCATCCTCCTGACCACGACCCATCAAGCACTGGGAACCAACGCCGGCATAAAAGCCCTGCTGACCAGCAAGGGCCTGCAGTATGGGAAGCACATTGGCACCAACCTGCTGCAGCAGAAGCTGGGGAGCCTGTCCATTCCTGATGTGACTGGGCAGGTCGACATCTCCCCCCTGGGGGCTGTGGACTTCTCACTCAACAGcaTGAGAATTACGAAGTTCAACCTGCCCGAGCCGTCCGCAGAATTCACCGAGGGACAGGGCATCATGGCGGCCATGAGCGGCCTGAACGTCCAGGTGCACGGCAACTGGAACACGCACTACACTTTCATAAGGGACAGTGGCACCTTTGACGTGGCCCTCTATGGAATGCACGTGTCCTTGCTGCTGTCCCCAGGCACGGACGACACCGgacacctctccctctccagccaGCAGTGTGTCTCTGGCCTCAATGACGTAGACGTCCACTTCTACGGCGGGGCCAGCTTGTTCTTGGGCAGCATTAAAGGAAGAATCATGTCCGAAGTACAACAAAAGCTTTGTCCAATGGTGAATGACGCGGTGGGCGGATTTGACACCGTTCTTCAAAACATGAAAGTCTCTGTCCAGATAAACCCGAATATCCTGGTTGAGGTCCCGCTGCTCAGCACCCCCATAGTGGGAGACTCGGACATGGAACTGAGTCTGAAGGGGGAGTTCTACAGTGTGCGGACCCACGCCGAGCCCCCCTTCCCTGCCGGGCAATTCTCGCTGCCCCCGGACAGTAGCCGCATGCTGTCTCTCGGTGTGTCCGAGTTCTGCGTCAACTCCGCCGCCTTCGCCTACCTGTCGGCCGGCCTGCTGCAGGTGAACATCACCGACAACATGCTGCCCAAGCAGTTCCCAGACATGCTGATGCTGGTGCAGGCGTTCGCCAGCCAGCCACCCCGCGCCTCCTTCCTGCCCGACAATGTGATGGTGGACATGTCTGTGGCCGCCAAGTTTTTCGCCATCCAACCCGATGCCTCGCTGGCGCCACTCTTCACACTGGAGATGGAAGCCAGTTTCAAGGCCCACGTGTTTATATCGGAGGAGAAGCTGAAGGGGTCTTTTGACACTGAGTCTGACGTCCACCGAGGTGGGACCGTTCCAGccAATCTGACTGCCGGCATCCCGCTGCCCACAACCCCCTCAGTCAGCTTGGTCAATCCTGTGCTCAAGGTTAACCAGGGTTTCATGACCATTGCTACAGACACCAGCTACTCCCCGTGAGCTGCTGAAAGGGGAGACTGTTGAACTCTGGCGAGGGAGGCTCCTAACTGAACCCAGACAAGCAAAATGTCAAGACTAACATTAATCTTCATAACTAATTATTTCCATGATGGACCTGGCAGTGGGGAGAATAAGAGTATCCCggcttttactttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34638 lncRNA downstream 3497 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 18374 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 70408 38855548 ~ 38855777 (-) True G27668
TU34602 lncRNA downstream 146433 38776161 ~ 38779752 (-) False G27661
TU34601 lncRNA downstream 146433 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 517377 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 826267 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 852883 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 904668 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 904668 39842331 ~ 39847044 (-) False G27949
AMCG00007984 mRNA downstream 19203 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007977 mRNA downstream 90048 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007976 mRNA downstream 108453 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007975 mRNA downstream 135400 38785536 ~ 38790785 (-) True AMCG00007975
AMCG00007972 mRNA downstream 183142 38733689 ~ 38743043 (-) True AMCG00007972
AMCG00007982 mRNA upstream 5172 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007988 mRNA upstream 39252 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007990 mRNA upstream 95124 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007989 mRNA upstream 132917 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007993 mRNA upstream 150894 39088557 ~ 39091895 (-) True AMCG00007993
TU34421 other downstream 761643 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 834307 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1337660 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1354697 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1356901 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 109626 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 116490 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 151259 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 562658 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2078496 41016159 ~ 41017248 (-) True G28202

Expression Profile