RNA id: TU34645


Basic Information

Item Value
RNA id TU34645
length 1964
lncRNA type sense_over
GC content 0.50
exon number 3
gene id AMCG00007983
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38924581 ~ 38937663 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagaccaaGTCACTGGAGAGCGTACTGAAGACAGGGATTCAGTTGCTCGTGCTGCCTAAAGTGAACGccAATCTGACTGCCGGCATCCCGCTGCCCACAACCCCCTCAGTCAGCTTGGTCAATCCTGTGCTCAAGGTTAACCAGGGTTTCATGACCATTGCTACAGACACCAGCTACTCCCCGTGAGCTGCTGAAAGGGGAGACTGTTGAACTCTGGCGAGGGAGGCTCCTAACTGAACCCAGACAAGCAAAATGTCAAGACTAACATTAATCTTCATAACTAATTATTTCCATGATGGACCTGGCAGTGGGGAGAATAAGAGTATCCCggcttttactttttttttttttttttttttttttttttaaatggaaaactaTTTTAAGCCTTAAGTTTGAAGCAGCCACCGAAAGATCAAGGACTGGCGTTAAAAAAACCCAACCTGTTCCTTTTCACAGAGACACACCAGTACTTATTTACAAGAGTAATTTGTACAGATTTATTACATCTTTAATACAGTTAGAACACAGGTTtgtcactttatttttaaaaagtccataatcattttaaaacgGCTAAATATTTACAAGAACAGGTGAATTATATAAATTTTCCCTGGAGTCAAGCCACCAGCCTCTGTGCAAGTCAACAAGCCTGTGGAGATCCAGGCAAGGTGTATAAATATTGAGGCGGAGAATGGGTCTCTTACACCACCAAAAGAAAAACGACAGACGAAGGGCAGAGCGAGCACCACACATGGCGGCGCTGTAgatcagagaaaataaaatacaatgaccTGGACTCACTGTCCAGGGCTGTTCAAGCCATTGGCTCTACAGGACGCCCCCCTCCCCTGACCGAATACTGACCAACTCCATCAGAAAGGAGCCGCACCCCCTGCCCTGGCCAGGGGCATCTTCAGAGCTAGGTAGTCTTGAGCTCTGGTGGGTGGCAGGGGCAGGAAGGTCAGTCTTAGCAACTGCCGCTTCACTGGCTAACGCTGGTGCTGGGTTGGCCGACTGTGGAGCACTTGGACTGCTCGATAACCCAGGGGTGGGCCAGCACACCCTGCAGGGGGAGCCGCTGCGCCGGGTTGTGCTTCAGCAGCTGGCCAATCAGATCCCGGCTCCCTGCGCTGACGTACTCCGGGTAACTGAACTCCACCTGCGGAGGAGGAAAACGTGGAAAGGCTGGTCAGAGGGAGCGTAATGGGAGGATACCTTTTCCACCCCCTGGTTCATCTTTCAGGGCTTTGCAGAGTTTAACACAAGGTTCTGCAGCATTGGTCCACAGCCAGAAGCCCATCCCAGGTGTGATAGCTCTGGGCCTCGAGGCCCCAGGGTTCCTTTCCACCCAAGCTTCAAATACAGAGTCAGAGTTAACTGCACCCCCCTTACCCTGGAGATCTTGCGGTAGGTCTCCTCGTGGCTCTTGGTCTCGAAGGGGGGCGTCCCTACCAGGAACTCGTAGCACAGCACGCCCAGGCTCCATAGGTCCACCTTCTCGTCATGCGTTCGCCCCTCAATCATCTCGGGTGGCAGGTAGTCCAGAGTGCCGCACAGCGTGGACCGCCTGCAGACACCAGCACACAGCTGCTCAGACGCCAGTGACCAAGGCAGCTGTCCGGACTACTACACCCCCAGCTCCCACTGCCCATCACTCTGGCTCTCCCAGATCAGGGCGAAACTGCTACTCTTTTTACTCATACAATATCGACCCATGGGTGTTTAGTAGAGCGGCCTTGGCAAGGCATCCAGAGTGctgtacagatttaaaaaatctggtggatttcaaaatatttcagcCCACTTCcaaaggttttttttccccccaccccaataaATGTTTCCCCTGTACACCCTTTACAGgatttcatttgtttccatgaagctgtaaaatgcaattaaacccCACAGACAACCGGTTTTCTAAATTCTAAttgcaataaatattttaaaccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34638 lncRNA downstream 1893 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 16770 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 68804 38855548 ~ 38855777 (-) True G27668
TU34602 lncRNA downstream 144829 38776161 ~ 38779752 (-) False G27661
TU34601 lncRNA downstream 144829 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 527469 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 836359 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 862975 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 914760 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 914760 39842331 ~ 39847044 (-) False G27949
AMCG00007984 mRNA downstream 17599 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007977 mRNA downstream 88444 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007976 mRNA downstream 106849 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007975 mRNA downstream 133796 38785536 ~ 38790785 (-) True AMCG00007975
AMCG00007972 mRNA downstream 181538 38733689 ~ 38743043 (-) True AMCG00007972
AMCG00007982 mRNA upstream 15264 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007988 mRNA upstream 49344 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007990 mRNA upstream 105216 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007989 mRNA upstream 143009 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007993 mRNA upstream 160986 39088557 ~ 39091895 (-) True AMCG00007993
TU34421 other downstream 760039 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 832703 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1336056 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1353093 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1355297 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 119718 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 126582 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 161351 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 572750 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2088588 41016159 ~ 41017248 (-) True G28202

Expression Profile