RNA id: AMCG00007985


Basic Information

Item Value
RNA id AMCG00007985
length 2687
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00007985
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39060647 ~ 39069306 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCGGGCTGGGGCGCGAGCTGTGCGGGATCATTGCGTGTGGAAATCCGTGCAAAGCGGCAGCGCCGGCGTTGAGCGGGGAACGGCTCTGTGCACCGCGCACAACATAAGCAGGCGTTTATTCATTCGCCGTCGGCAACGCATTGCAAAGAGCAGACGGGCCGGACAGGGACAATGCTGCTGCACGCCGCGGCACGGGAAGCGAGCCTGCTCGCCAGAGGCTGGAAGTTCACTAGAGGTGTACAAGTTGCGGCCGGGGCAGGGCAGAGGAGTCCCACCTGGGCCCGGGGCGATACCTGCTCTGATCTGGTTTGGCTGGGGGAATCTGACCTCCACAACCTGCAGTCTGTGACCGGAGGCGCTGCGGGAGCAAGCCGGGGCAACGTGCTCCTAAAGCGCCCGACCTCAGTGGATCACAGCGGCTGGGGGGCTTGCAAAACCATGGACTGCGTGCCACACTGGGGGCAGAGTTGGTCTGCGACGGGGACAGTGGCCCCAGCCCCGGTGCGGTGGACTCGCAATACAACAAGTGGGCGATGGGGACACAGCCCGCACCCAGACAGCAGTCGGGCGGCTCtctggggggcagggggcagccTCCTGGCGGTCCACAGGCAGGGCGCGCTGGACCCGGTGCTGTTCTGGGCAGCGAGGCGTTTCTATCTGCTGTCTCCTGCGGGCAGGGGGCAAGCCAAGGCCGGAGCAGCGCCAGACGCCGGCGAGAAACCGCAGACAGGAGCCGACCACCTCGACCTGACTTCCAAATCCAGTGAGTCTGCAGGTGTGTCCTCGAGCCAGGGGACGAGCCAGGAGGTCAAGCCCAGCAAGGCCCAGCAGCTGAGGAAGGTGTTCAAGGAGTACGGAGCGGTGGGCGTCACGTTCCATGTGGGAATATCCCTCATGTCTTTGGGAATTTTCTACCTGGCCATCTCCAGTGGGGTGAACATGACAGCGCTGCTCTTCAAGCTGGGCTTCAGTGAGGCGGTGGTCCAGTCCAGGATGGCGGCCGGCACCAGCACCTTTGTCCTGGCCTACGCCGCCCACAAGCTCTTTGCCCCGGTGCGCATCAGCATCACGCTGGTGTGTGTGCCGCTCCTCGTCAGACACTTCCGCAAGACCGGCCTGTTCAAGCCCCCGGCCTCCAGCCCCTGAGGGACCGAGAGGACTCCTGACCACCCCCTCACCCCGCCCTCCCCCAGTTTTTCCTTCCTGCCTTCCGTCCTTGCTGAGCTGCTGAAGGGTCTCCTCTCGCCCCACCCCCCTCCACGGCATTACCAGCAGTGACGTGCTCTTGCTTGTTTCTTaaaaattattactttaaaaacattttattattttaaatgttgtgtcCCATCCGTCAGCAGACAGACTCGCACCTGAGACGAGCCCCTTCACCGGAGAGACGAGGCTGTGGACGCTCACTGCGGGGGTGTTTCTTGGTGTGTCTGCGGCCTCCTTGTGCCTGTGAAAGCCACCGCTCTCCTCCTTCCCCTGGCTATTTTTAGCCGGATTGTCCCTGCAGGTGTTTGAACACGGGCCCTCGAGGATTAGTGTCAGAGCAGcagggggagagatggaggggggaACTGAGAAACGTCTTTGTGTGCCGATCAACTGTGTGTCCACAGAGGAGCCTGAAGAGTCTATTTAATGCCAGACTGGGCAGAataaacttgaaaaaaaaaaagactgatttaGATGATTGtgcacaaaacaagaaaaaaaaccaTTGAGGATGATTCATGTTTACAATCAAATCTTTCCTTCTACACTTGAATGCAGAATGCTTGTGAAGGACTCGCATCGCAGGACGGAAGCAAGCCTGGCTGAGGCGCTGCACTAACTGGTTGTTAATGAAGCTCTGTGGGGAGACAGGGTGCGGCGGGGTGTGTGCATTAGCCTGTGGAAACCCAGTGACGCTCCCTGTCCCCTCGGCCAGTGTGTGAAGTCATTGctgtttatttcattgtgtGCGTTCACAGTGGGCCCCAACTCGAGTTGCTTTATAAGGTCAGGTTGTACACCAcacaaaataagttttaattgtgtttattattataataaggcCCAATGTCATTCAGGATAAAAGTTTCTGAGGAGGCTGCTGGGCAGTAAAGAGCTGCAGTGATGTTACTCCTGGCGGCGGGGCTCCTCACTGCTGTGCAGTGCGACCAGTCGAACTTTgataaagaaaccaaaaacacacaatgcactTCAGTACGAAACATATTCATGACTTAAAGGAATAACTTAAGCTTCTCTTTTGTTTCTTCccaggatttaaaatgaatgatgtgTATTTAAGAATaactttaaagctttaaatgtgtgtgtgttatgggtCCAGTGTGTAGAGCAGTTTGCAGTGGGAAAGGGATGCAGAAGAACTGGTTTGACCGgtaggagagaaaaacaaagacgtTTAGGACTCTGGCACTTGTGCACACCCCTCGCCCGCACCGCACTCGCCTGTGTGATTCTGTTTGAAAGCTATTCTGGGTATTTTCTGATTTAGAGCTGTTTGATTTATTAAATGAGGAACCTTGAATCCgtttttctgttgtgtgtttgtcgCGGTGTCGTTTGTGACAACAGATCTGCCATTATCAGTTCTGCTAGTGTGACTACtggagtgtgagtgagtgtgagtgagtgtgtaatCTAGTATCTCTGCAGGCATGTCtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34674 lncRNA upstream 913 39059531 ~ 39059734 (+) True G27709
TU34673 lncRNA upstream 5020 39054539 ~ 39055627 (+) True G27708
TU34617 lncRNA upstream 152465 38906054 ~ 38908182 (+) True G27670
TU34610 lncRNA upstream 204880 38855531 ~ 38855767 (+) True G27667
TU34587 lncRNA upstream 226053 38792449 ~ 38834594 (+) True G27648
TU34734 lncRNA downstream 137075 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA downstream 137075 39206381 ~ 39208293 (+) False G27760
TU34770 lncRNA downstream 197116 39266422 ~ 39266673 (+) True G27781
TU34781 lncRNA downstream 221662 39290968 ~ 39291221 (+) True G27788
TU34870 lncRNA downstream 441105 39510411 ~ 39592411 (+) False AMCG00008007
AMCG00007987 mRNA upstream 7727 39050962 ~ 39052920 (+) True AMCG00007987
AMCG00007986 mRNA upstream 47796 39004001 ~ 39012851 (+) True AMCG00007986
AMCG00007980 mRNA upstream 134976 38921036 ~ 38925671 (+) True AMCG00007980
AMCG00007978 mRNA upstream 142671 38909285 ~ 38917976 (+) True AMCG00007978
AMCG00007981 mRNA upstream 156136 38900328 ~ 38904511 (+) True AMCG00007981
AMCG00007991 mRNA downstream 34869 39104175 ~ 39112999 (+) True AMCG00007991
AMCG00007998 mRNA downstream 168742 39238048 ~ 39239628 (+) True AMCG00007998
AMCG00008001 mRNA downstream 307672 39376978 ~ 39378054 (+) True AMCG00008001
AMCG00008004 mRNA downstream 342384 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008005 mRNA downstream 376764 39446070 ~ 39455574 (+) True AMCG00008005
TU34527 other upstream 351732 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 624052 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 647718 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 890586 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 913797 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 433773 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 763083 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 987326 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1172006 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2923553 41992859 ~ 41993377 (+) True G28395

Expression Profile