RNA id: AMCG00007988


Basic Information

Item Value
RNA id AMCG00007988
length 2795
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00007988
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38976915 ~ 38985485 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGACCCCAGCCCCTCCGAGATGAGCCAAAAGCCCTGGGCCAGCCCAGCTGACCAGACCGCTGCCATCCACACACCCCCTCCTCAGGAACGCCCAGACAGTCTGTCCTTCAGGGACTTCTGGACCGAGGTGGAGCACATCCGCCAGGGAAGCAGCGACAGCGAAGCGGACTGTACGGCACGGGACTCCAGACACACGGAGGAAGGGGAGCAGGAGAAGCAGTGGCTGCAGGATGCTGGCCTGTCCACTTTAATCAGCGAAGACAGTGAGGACGTGGACAAGGTGGTGTTGCTGTCCACCCTGACCCGCACGCAGGCCGCGGCCGTGCAGCGCCGTCTGGACTCCTACACCTGCTCCCTGCGCAAGAGGAGCAAGCAGCCCCCCCGTGACGTAAGGGACATCTTCAGCCACTCCACCAGCACCCAGGAAGACAACtcacagAACTCTCTGGCAGAATCCCAGGACTCTGTTCCGGAACTGCGGACCCGAGCCCCAGACGGCAGAATGGACAGCCAGGGCAAAACACCCCCAAAAGCTGTGAGTGTGGATTCACAGGGCAGTGTGGCCAGGGAGGAAGTGTTCAGCACTGACATCGCCTACTGTGAACAGGCCGCCATACTGCTCAAACAGGCCAAGCAGCCCAGGCCTGGCCCCTTGCGCCGGCGCAGGGATGAAGGCGCTCTCACAaaaGTGGTGTCTCCGCAGTGCCGCCTCGGCGTGACCCGGATCCAGGACCTGTCTGCCCAGGACATGAAGAAAGTGCGGCAGCTCGCACTGATCGACATGACGGCACTGTGCGACCTACTGGAGCTCGACCTCAAGCGGCACAAGATCGGCAAGAGGAAGATCCCGGagAGCTCGCTGTTCGGGGTGCCCCTGGCCACACTGGTGGAGAACGACCAGAAGATCAAACCCAACATCACTGTCCCTCTCATCCTGCACAGGGTGAGTAGCCCCCGCTCCtatgcccccccgccccccccgcaCGCTCTTTCCCTGCCATACATCAGACCAGCTCACCTGTGCAGCAGCTTCCTGGTCCTGGATTACCTACGTGCTCAAAACGGCAACTGTGAGCAAATCAAGTTTAGATTAATGGACATACACAGTGCCGGGCTGACCCAGGGTGCACTCTCTCTCCCGTCACAGCTGCTGTCCTTCCTGGAGAAGAAGGGCCTGGACTCAGAGGGGATCCTACGAGTTCCGGGATCCCAGGCACGGATAAAGGTCCTGCAGCAGAAGCTGGAGAGCTCCTTCTACAACGGGGGCTTCAGCTGGGAGGAGATGAGCCCCAATGACGCTGCCGCCCTGCTCAAGAAGTTCATCCGTGAGCTGCCCACCCCCCTGCTCACGGCCGAGCACCTCAGCACCTTCAGTGCCGTCAGAGACATCCTGGACCTGAAGCCCAAGCTGTGGGTCCTCAacctgctggtgctgctgctgcctgaGCCCAACAGGAGCACCCTGAAGGCACTGCTGGATTTCCTGAGCCGAGTGGTGTCCCACGAGCGCCGGAACCGCATGAGCCTCTGGGCCGTGTCCACCATCATGGCGCCCAACCTGTTCATGCACAAGGCTGTGCCCTGCAAGCTGGCGGAGGGCGAGGAGAAGGGGCAGGCAGAGCTTGCCGCCGACGTCATGCGGCTCCTTATCCGCCACCAGGACCTGCTGTGGACGATCCCCAACTTCCTGATGAGCCAGGTGAGGAAAATGAACGAGAACAGCAGCCGCCGGTACCAGTTCTATGACAGGCGCATCAAGAGCCTGCTGAGGAAGATCCACACGGAGAGCCGTGAAAAGCAGGACAAGAACACCTCCGAGCCATGCCGCACAGTGAAGATCCAGTTGGGGGAGCTGCTGAGCAGCACCATGGAGGTGCGTCTGAGCATGGACTCTCAGGCATCCGACCTACTGACCCAGTTCCAGCGGGACCTGCGCAGCTCTGAGAACGGCAAGAGCCTGATGAGGAGCATAGCGCCTTGTTTAAAATGCACCGTATCTCCCCCCCCCGACAGTAATGGCACCATCGTCTACCCTGACTGCGCCATCTACGAAGTCGGAGGCAACATAGGTGAGCACTGCCTGGACCCCAACACGCACCTGCTGGACCTGTACAACAGCAACCCCAGGGGAGAGTGGGTGATCAGGTTGAAGCCCGGGACCTCGCGGGGTCTCTGAGAGCCGGGGGCTTGATGGGTCTGCGCTCTGGCACTGGACCCGGGGCGGTGGCCACGGTCACTGCCCAGGCCGCCAGGACAGAAGGGACTTCAAGGCAGGAACAGGGCAGGCATCCCTCTACCTCGGGAGGCCTTTTCACAGAGAGCCCAGGCCAGGCAgcaacagagaaagagagagaggagtgagtGATCCCAGAGCTGAGAGCTACTGGGAGACATCGAACACTAACACATTGTTCCTCCACGTCTCTGTCCTGTACGGGTCTGCCTCTGCTCACCACTGAGGGGACAGACTGGCCTCGGCCCCCCTCCCTCCGTCCGGTGTTGTGGACAGCTCGGCCCAGGGGagctccacacacacattctggGTTCTGGGGAGAACATTCCAGAAGAAGCTGGCATTCCGTCGCCCTGGGCACAGAGGTCCCGAGCAGCCGGCCAAGGAACTGTCCACTGCTTGGGGATGATGAACTGGAAAATAGATCGTCAATGGCAACTGTACCAAAAGAAGCTGGACTtcaattttgtgtttgatttggcggtttgtttgtcttgtattttgtttttttgaaggacaaaaattactgtttttattatttatgaataaatacataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 49344 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 54227 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 69104 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 121138 38855548 ~ 38855777 (-) True G27668
TU34601 lncRNA downstream 197163 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 469555 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 778445 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 805061 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 856846 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 856846 39842331 ~ 39847044 (-) False G27949
AMCG00007982 mRNA downstream 27393 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007983 mRNA downstream 39252 38926185 ~ 38937663 (-) False AMCG00007983
AMCG00007984 mRNA downstream 69933 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007977 mRNA downstream 140778 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007976 mRNA downstream 159183 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007990 mRNA upstream 47302 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007989 mRNA upstream 85095 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007993 mRNA upstream 103072 39088557 ~ 39091895 (-) True AMCG00007993
AMCG00007992 mRNA upstream 128226 39113711 ~ 39150259 (-) True AMCG00007992
AMCG00007994 mRNA upstream 187003 39172488 ~ 39204907 (-) True AMCG00007994
TU34421 other downstream 812373 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 885037 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1388390 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1405427 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1407631 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 61804 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 68668 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 103437 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 514836 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2030674 41016159 ~ 41017248 (-) True G28202

Expression Profile