RNA id: AMCG00007989


Basic Information

Item Value
RNA id AMCG00007989
length 1989
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00007989
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39070580 ~ 39078098 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTCTCTCCtattcctcttcctcttcccagCCGAGCGCTGTAAGGAGGTGCAGCAGATCCGGGAGCAGCACCCCAACAAAATCCCGGTGATCATTGAGAGGTACAAGGGAGAGAAGCAGCTGCCTGTTCTGGACAAAACCAAGTTCCTGGTCCCTGATCATGTCAACATGAGCGAGCTGGTCAAGATCATCAGGCGCCGGCTGCAGTTGAACCCCACACAGGCCTTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCGACAGCCATCGCCGAGACCTATGAGCAGGAGAAGGACGAGGACGGCTTCCTCTACATGGTGTACGCCTCGCAGGAGACCTTCGGGCGCTAGAGAGATGGGGAGGTGGGAGGATTGTCATctgtgcagagagagggagaccgAGAGAAGGGGTGCCGCAAAACGCTGGAGAACAGTcactccttcttctcctcctttctctctctctctctctctctctcatgcacgTAGGAATCTGTCCTAATCCCCTGCGTATTAAACTGCAAACACAGCAGCTGTGTCTCTTCCTGCACGTGTCCGCCGTGTGGTTTAAGGCTCTTGTGTGACTTACtcttgaagtttttttttgtggtcaTGTCCTCTGCCTTCCTCTTCTCCACCTCGCATCGCCCTGTCCTGGCTGTCCCATCCTTCTTCTCTCCTGTAGTAGTTGTGCTAAACTGTGCACCATTGCCAAAATATCCCTTGGCCTTCAACCACTCATCTGGTTGCTGGGGTCGGGCCTATGTGTTGAAGAGGAAGGACTCTGCTGCTTCCACCCACTGTGGTTCACACTTGGTTAGTCattctttttgtgtttcattactTATTAATTTCTGTCTCCTGATGTTCAGAAGCACAGTTGGCCAAGATGCTGTGTTTCTGCCCACTGCTCTTGCTCCAGCAGCAATTTATTCTTCCCGACAGCAGGAGTTCCCAGCTCTGTTCATGGGGCCTGCTGTGCTGCTGGGTTTTGTTGCACCTGagcttaattacttaattgaaaccttaattgaacttgtCCCCGTAACCTGGGCGCTCGGTCCAGCGGGAGAAGACAACAAACAGGGCAGTTAGAACACCCTTCTGATCGTCTTCCACTGAgtcatgtgtttaatttaatttttccccCACATTCAAGTAAATAAGTAACTTATTCTAGCAGGATGATctctatgtaaaaaaaaaatatatatacatatatataaatgggaAGTTTGAAAGATTCTTGCTTTGCAAACCCCCATATCAGTGTACCCCAAGGACTGGTGTGTCACCTCTGTGTGTTGTGatggtgggggggcaggagggGCCACTACTGTAAAACCTTAAGTGTTCTTCAGTTTCTGTGATACTGTAGCACCAGTCCCACCTCTCTGCCTCGGGCTCCATCGCAGTGGGATGTCTCgggagggaggggggtgctGGTCTGTGTTGCCTAGCATACTCTGTCCCGACGTCTCTCTTGTTCAAGTGCAATGGCCAGCTTTTACTGCAGGGGAGAGCAAGAGAAGTCCAGGGTGGGGGGAACTGTGGAAGTCTCATCCATTAGTGAACTGCTCTTTTACATAGGAATAGACAAGCTtttttgcactttaaaaaaaaaaaaagatataaaaaaaattaaaagacttAGGATCTAAgtactgttttaaatgtgtatataatataatggatTGTGTGTAACCAGGTCTCTTCTAGAACACTAtattctgtgtgtatgtgtgtgttgctggtGTGTGTAATGGAGCGAATGGGGTTGTGATGCAGTATATATCGCGCACGCAGTTTCGGCCTGTATGCTTGTTcatgtggttttgtttctttctttgtttcttaaaaatgtatatctttttaGATTTCTTTTCCATACCAAAATAAATCATCAATGAACTGaattgtgtctctctgtggggCTTAGGGAGGGGTGGTGTGGAAGCTCGTATTACTTGTATAAACGTG

Function

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 143009 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 147892 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 162769 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 214803 38855548 ~ 38855777 (-) True G27668
TU34601 lncRNA downstream 290828 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 376942 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 685832 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 712448 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 764233 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 764233 39842331 ~ 39847044 (-) False G27949
AMCG00007990 mRNA downstream 21260 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007988 mRNA downstream 85095 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007982 mRNA downstream 121058 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007983 mRNA downstream 132917 38926185 ~ 38937663 (-) False AMCG00007983
AMCG00007984 mRNA downstream 163598 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007993 mRNA upstream 10459 39088557 ~ 39091895 (-) True AMCG00007993
AMCG00007992 mRNA upstream 35613 39113711 ~ 39150259 (-) True AMCG00007992
AMCG00007994 mRNA upstream 94390 39172488 ~ 39204907 (-) True AMCG00007994
AMCG00007997 mRNA upstream 128209 39206307 ~ 39213355 (-) True AMCG00007997
AMCG00007995 mRNA upstream 142984 39221082 ~ 39236482 (-) True AMCG00007995
TU34686 other downstream 14901 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 20983 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 906038 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 978702 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1482055 37573034 ~ 37588525 (-) True G27442
TU34691 other upstream 10824 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 422223 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 1938061 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 2121391 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2768835 41846933 ~ 41849890 (-) True AMCG00008085

Expression Profile