RNA id: AMCG00007992


Basic Information

Item Value
RNA id AMCG00007992
length 4783
RNA type mRNA
GC content 0.52
exon number 29
gene id AMCG00007992
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39113711 ~ 39150259 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCGGCACTCTACAGCTATGGAGCTTCAGCCCGGGgcACTGGACTTGGACCGGACGGTTCTACAGAAGATGAAGAAAGCAGCCAAAGCCAACCACGCCTCAGGACAAGACCACATCTCACATCTGGAGTCATACATCAATTCTATGGAGAAGCTGGCTGTGAATTTCAAAAACAACGGAGAACAGGATGTGGCATCGGCATTCAACAAGTTTGCAGAGTATTCCAAAGAGCTGCTCACACCAATGAAGAATGTGTTGCAGAGCATGTACCACAACATCAACTTCTTCCTGGACTCGCTGGTCAAGGGTGACCTGAAGGAGGTTAAAGGGGATTTGAAAAAGCCCTTTGACAGAGCCTGGAAggattatgaaaataaattCACCAAGATCGAGAAGGAGAAGCGGGAGCTGGCCAAGCAGTACGGCATGGTGCGCACGGAGGTGAGCGGCGGTGAGATCGCcgaggagctggagaaggagcGCCGCATGTTTCAGCTGCAGATGTGTGAGTACCTAATCAAAGTGAATGAAATCAAGACAAAGAAAGGAGTCGACCTGCTGCAGAACCTCATAAAGCACTATCTCTCCCAGTGCAATTTCTTTCAGGAGTGTCTTGCAGCCACAGAGAAGCTGAAGCAGTATATAGAGGCCCTGATTGCTGAGCTGACGACTATTAAACACAGGCAGGACGAGGAGAAGAGGCAGTTGTGCACCCTGAGGGAGCAGCTGAGGTCGGCACTGCAACCCGAGCAGAAGGAGGACTCCCTGAGCAGACAGACAGTGTACAGCATGCACCAGCTGCAGGGGAACAAGCAGTACGGCACAGAGAAATCGGGTTACCTCTACAAGAAGAGCGATGGGCTGCGGAAGGTTTGGCAGAAGAGGAAGTGTGCCGTCCAGAACTGCTACTTGACGATCGCTCATGGAACACCTAACAGGCTCCCGGCAAAACTCAACCTGCTCACCTGCCAGGTGAAGCCCAGTCAGGAGGACAAGAAATGCTTCGACCTCATCTCCCataACCGCACGTATCACTTTCTAGCCGATGATGAACCCGAATGTGTTGcGTGGATCTCGGTGCTGACCAACAGCAAGCAGGAGGCTCTGAACGTGGCCCTGGACGAGACCAAGCCCAGCGGGGAGAGCAGCGTGGAGGACCTGACCAAGGCCATTATCGAGGACGTGCGCCGCATGCCCGGGAACAGCACCTGCTGTGACTGTGGGGCGCCAGACCCCACCTGGCTCTCCACCAATCTGGGAATCCTGACATGCATCGAATGCTCCGGGATCCACCGGGAGATGGGGGTGCACCACTCTCGGATACAGTCCCTCTCCCTGGACAAGCTGGGCACCTCTGAGCTCCTGCTGGCCAAGAACGTTGGGAATTCTGGCTTTAATGAAATCGTGGAAGCCAACCTCCTCAGTCCCTCCCAGAAGCCCACGGCAGAGAGTGACATGGCGGTGCGGAAGGACTTCATCGTGTCAAAGTACGTGGAGCGCCAGTTCTCACGGCGGAGCGGCAGCTCCCCAGAGGCCCTGCGGCGCAGCCTGCAAGGGGCAGTGAGGAGCCGGGAAGTCTTCGCTCTGCTGCAGCTGTACGCGGAGAGGGTGGACCTCAGCCAACCGCTGCCCAGCCCTGCACAGGAGCAAGGGGAGGCAGCCCTTCACCTGGCCGTGCTATTGGCTGATCGAACCTCATTGCACATGGTGGACTTCCTGGTGCATAACTGTTCCAATCTGGACAAGCAGACCGTCCGGGGAAACACTGCCGTGCACTACTGCTGTCTGCACAACAAAACAGAGTGCCTTAAACTGCTGCTGAGAGCCAAGGCCAACACACATCTCAAAAACGAGGTGGGAGAGACTGGCTTAGACATCGCTCACAGACTGAGACACACTCACTGTGAGGAGCTGATCCAGCAGGCCCAGAACAACCAGTTCAACATGCACCTGCACGTGGAGTACGAGTGGAGGCTGCGGCAGGAGGACCTGTACGAGAGTGACGACGACCTTGACGAGAAGCTGGGCCCTGTGAAGAAGGAGCGCTCCAGCCGGCCGTTCAGTCTGTACCAGACCCCCAGCTCGGACCGTGCGGACCGGGGGGCCTATGCCGCGGTGGGCCGCCGCCTGGCCGGTCTAGTGCGGGACACCCGCCGCGAGATTTACGCCCTGCCCAACTCCCACACCCGCAGCCTGGACAGCCCCCCGCCTCCCCCGCCACCCTCTTCGCCCGCCCCGCCCCTTCCTCCCCGGCTACGAGCTCCAAACAtgcccccacctcctcctccggTCAGCCCACCCGACGCTCGGTGCGATGGTATGTCCAGCAAGAAGAGGACCCCTCCTCCACCTCTGGTCATCCGGCACAAGCGCACTCTTTCCGAGCCGTCCCCCCAGGTTCCCCACAGCCCCCACACCCCGCGCCACATCTCCCTCGATTATGGGATGCCTGTCAACTCCAGAGGCTTCGGCGGTCCTGAAAGCTCATTCCAGAAATCTGGCTCAGGGTCCCCAAAGTACACTGTGTCTACTCTCAACTGCCTGCCCGAGGTGCCTGAGAAAGGGATCCACTGTAGGGCCGATGCCGAGGGCCACTCGTCTCAGTGGATCTACCAGACTCCCCAGCCCAGCAGTCGCGGCCCCCCTCCCAGCTCCCCCCCCTACCGCGGCTCTGGCCCTGAGCCCAACGGAGCCTCGCATGtttccaccccccaccccctgcccagGAGTGCTCTGATGAAGCCCCGGGTGCGGAGGGCGAAAGCCATCTACGACTGTGTGGCCGACCATCACGACGAGCTGACCTTCAATGAGGGGGAGGTGCTGGTGGTGCTGGAGGAGGAAGATGCCGATTGGTGGATGGGCTACGTGGAGGGGCATCCTTACAAGAAGGGCCTGTTCCCCGCCTCGTTCGTCCAAATCCTGTCTGAATAAACGCTGGCAGAAGACCTGGCCCCGCAGCATGACCTGTGACCTGTGATCCACGTCAGCAGCACGGAAAAACTCTGCTCCTCCCATTTGACATGAAACTTGACACGTGCCCTCTACTCTTTTGTGCTCAGGCACGGAAACCATAACTACACaaaacgttttgtttttttttatgagggGGGGGCAGGTTCAGACTTCTAACAttaaagagaaaaggagagtTCAAATCAAAGGTACCGTGGGAAACCTCACAACTGGATGAATGCAGTagttctgctgtgtgtgtggggggtttcCGCATGTGCCCAGAACATGGCAAAACAGTGGCCGGTGTCTCTCACCCTGCTCCGAGTGATGCATGATTTGGTGTGAGATGGCGTGTTCTACCTTCAGTTCTCTGAGCGAATCCTGTCTGTCCATGACGGATTACCACACCTCTCAAAAACCAGAAAAGGAATCGACGCAACCCGACAAAGACCAGAGACTGGGTGCTGGTCGTGCCGTTGGCGTCTGCAGGAAGTGTGACTAATATGAGGCATCATCATGTCTCGGATCAGTTTGTTTGATTGTCGCATTGTTTAGCTTTAGTCTCGTTTTAGTCTGTTTTTGGGCAGTGGGGGTTGGAGGGTAGTCACGGCCAGAACAGAGTGTTTCTAAGAAATtcctttaaataagaaaaaaaataatcatccaTTTTAGAGCGAGCACAACAGTAAGATGCGTGAATGAATAGAGACAGGCCATATCAGGTGACGATATGACGAAGGATCTTGTTACTCAGGTGGGAATCTCCTGACGGTTTAAATATCAGGGTCAATACAGCTGTGCAATATCTTGTTGGCTGTTTATTGGTGTGAGTGTGTACAGTGCGTGTGGATGTGGTGTGAATACAGTTCAGTGTGAGTGCTTTTTAGTAAGATTTTCAGTCCACACTAGGCCTGAGGAACCAGTACCGTTGGCATTGTAGCACAGTCAGCTATTCTAGACCCATCTCTCCCCCTGTGAGTGGCTGAGCCCTCTCTGACAGCACACGCAGGAATTagtgatgaaataaaaataaataaattgcacacCGAAAAGCACAAATAATCCAAAAAGAGCAAAACCAATATACAGaactgtcagtcagtctgtcagtgttcAGTCCTTTTCTCCTTCCCAGAACAAGAACCTCTAGACAATCACACTGGTCTCAGGCCCTGGAGAGttgtagcattttttttatttaagatgcATATAGAAAATATTGGATTAACTgggttatttttcttgttgtttttacatttgtttgtttaattgcttccccagtGTTTTCggcatgtttctgtgtgtgtgtgtgtgtgtgtggcagaaTGATCTACAGTATTTTTGAGGCAGTATTGGTCTTCACTGGGTGTAAAAACACAGGCTGGTTTAATCTAAATACTTGAAACTTTTCACAGATACTGTACGGCATCCCTTCACGATGTCTCGCGCATAAATTATCTGCTTTCCAATATCCCATCTACCTTCTCCACGTACAAACCGTacgtttatttttgtaacttgtAAACTACTCACATTAGGTAGCAGctgtcctgtctgtgtgtggtaATTGCTGTAACATGTACATGGAGTATTACAATAATAGACATCACTATTGAGGTTTTGCCATCACTATTTTCTTTACCTGAAAGCAAGAGACAGGAGTTGTATAAAagttcatttcagtttgaaataatTTGGCATTGCAGCAAGTTTTTCTCACCTTGCCTTAATTACTTTCTGTATGTACCTATATTGTTTGTCTGTCTTGTTTATGGTacctgatattttattttgagagaaaaaaaaacagcaaagtaTTATA

Function

GO: NA

KEGG:

id description
K12488 ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 186140 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 191023 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 205900 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 257934 38855548 ~ 38855777 (-) True G27668
TU34601 lncRNA downstream 333959 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 304781 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 613671 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 640287 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 692072 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 692072 39842331 ~ 39847044 (-) False G27949
AMCG00007993 mRNA downstream 21816 39088557 ~ 39091895 (-) True AMCG00007993
AMCG00007989 mRNA downstream 35613 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007990 mRNA downstream 64391 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007988 mRNA downstream 128226 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007982 mRNA downstream 164189 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007994 mRNA upstream 22229 39172488 ~ 39204907 (-) True AMCG00007994
AMCG00007997 mRNA upstream 56048 39206307 ~ 39213355 (-) True AMCG00007997
AMCG00007995 mRNA upstream 70823 39221082 ~ 39236482 (-) True AMCG00007995
AMCG00007996 mRNA upstream 90188 39240447 ~ 39258230 (-) True AMCG00007996
AMCG00007999 mRNA upstream 119708 39269967 ~ 39289998 (-) True AMCG00007999
TU34691 other downstream 21956 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 58032 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 64114 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 949169 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 1021833 38085929 ~ 38091878 (-) True G27502
TU34865 other upstream 350062 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 1865900 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 2049230 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2696674 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3610745 42761004 ~ 42764654 (-) True G28581

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_03704267_03746574.mRNA True 3251 mRNA 0.49 28 CI01000306 3704267 ~ 3746921 (+)