RNA id: TU34691


Basic Information

Item Value
RNA id TU34691
length 1082
RNA type TUCP
GC content 0.47
exon number 4
gene id AMCG00007993
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39088557 ~ 39091895 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCGACTGCGCATGCCTGGGTGGTTCTTGTTGTGTTGTAGTCGCTGCTAGGAAGCTGCATCGCCGCTCGGAGAGAAGCTGCGGGCTCTTCACAGACATGGCTGAGGTGGAGGAAACCTTGAAGAGAATCCAGGGGCAGAAAGGAGTCCAGGGAATCATCATAGTTAATGCAGAAGGAATCCCCATCAAGTCGACGCTGGACAACTCCACCACGGTGCAGTACGCCGGGCAGATGCACCAGCTGGTCACCAAAGCGCGCAGCACGGTGCGAGACATTGACCCACAGAACGACCTCACCTTCCTGCGCATCCGCTCCAAGAAGAACGAGATCATGGTCGCCCCAGaTAAAGAGTATTTCCTCATTGTTGTCCAGAACCCAGCAGACTGAGAAGAATCTATTTTTGGGTTGTAATTATTATCTATTATTTgagttcaatatttttttaatttaatggcCAAATGTGTTCTCTGCTAAATTATTTTGATGTAAAGCTTTTGCATTTCTGCAGCAAGAAAAAACGAACTATACAGTAATTCAGTGATCTGTGCATTACTTTGgagaaacacactcactcactcacaacAGCAGAACAGAGTTGCACTGGTGGAAGAGGAGGAATTACACAACTGGAGGGATGGAGCATGGAGGAGTCCATTGTGTATTGTGGTGCCAAGACCGACACTGGACATCTGGACCTCTTCTGTCCTGAGAAGGCTGTCTACAGCAAGAACCCCCACCCGGCCTCCCCTCAACAGCTGGTGCCAGAGCTGAGCAGTGAGGTTCAGcctagttatttaattattattctttaacaGTTGTATTAATTGACAAGCTTTGGATAAAGGTTCCTCTGACCCCCAAGAGGgagctgaaatacattttattttagtcagtttgtttgttttgagctCCTCTGCGCTGTTCTGAAACCCCACACCTGTGTTGTGCACTAAACTCAACACCATGACAGACCTCTGAGCTGCTGCTTGCTCCTTGCTCTTTTACCTTGTCAAAGATGTGTTCAAGGCGCTGTATGATATGCATTAAAGCTCCAACCAGTTGCACAAGTGAGGGGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 161351 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 166234 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 181111 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 233145 38855548 ~ 38855777 (-) True G27668
TU34601 lncRNA downstream 309170 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 363285 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 672175 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 698791 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 750576 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 750576 39842331 ~ 39847044 (-) False G27949
AMCG00007989 mRNA downstream 10824 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007990 mRNA downstream 39602 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007988 mRNA downstream 103437 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007982 mRNA downstream 139400 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007983 mRNA downstream 151259 38926185 ~ 38937663 (-) False AMCG00007983
AMCG00007992 mRNA upstream 21956 39113711 ~ 39150259 (-) True AMCG00007992
AMCG00007994 mRNA upstream 80733 39172488 ~ 39204907 (-) True AMCG00007994
AMCG00007997 mRNA upstream 114552 39206307 ~ 39213355 (-) True AMCG00007997
AMCG00007995 mRNA upstream 129327 39221082 ~ 39236482 (-) True AMCG00007995
AMCG00007996 mRNA upstream 148692 39240447 ~ 39258230 (-) True AMCG00007996
TU34686 other downstream 33243 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 39325 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 924380 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 997044 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1500397 37573034 ~ 37588525 (-) True G27442
TU34865 other upstream 408566 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 1924404 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 2107734 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2755178 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3669249 42761004 ~ 42764654 (-) True G28581

Expression Profile