RNA id: AMCG00007996


Basic Information

Item Value
RNA id AMCG00007996
length 2899
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00007996
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39240447 ~ 39258230 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCTCCATCACACTGAAACCTCCAGAGGGACGGCCCCTCAGGATCAAACTCACTTTTATGGATGGCATGGCGCAAAACACAGAAGCTTCACAAATCTTCATCCTGAGCAACAGAGACCCTGCTGTGCTGCTGGGAAAGTGTCAGAAAGTGTTCCAGCTCAGGTTGACCAGCAATATGGCAGACGATTTTGATATTGAGGCTATGCTCGAAGCTCCTTACAAGAAGGATGAGAACAAGTCCAGTAATGCGAATGGGCATGAGGAGCGCAGTAAGAAGAAAAAGAAGAGCAGGAGCAAAAGTCGCAGCCGGAGTCGCGACAAGAAGCGCAGCAAGAGTAAGGACCGCAAGAAAAGCCGCGACACGAAGAGAAGCCGGAGCCGCGAACGGAAACGCAGCCGCAGCAGGGAACGGCGCCGCTCCCGCTCTCGCAGCCGGGAGCGCAGTGGCCGGTACAGAGCCCGCAGGAGCCCATTTTCTGGGGCGAAATTTAACGGTGGCTCCAGAGGGAAGATTGGTCCACCACCTGCCATCAAACTAAGccGCAGACGCTCTAGAAGCAGAAGCCCTTTCAAGAAAGACAAGAGTCCAGTAAGAGAGCCCATTGATAATCTGACACCCGAGGAGAGAGATGCCCGCACTGTGTTTTGCATGCAGCTTGCAGCCAGGATTCGACCGCGTGATTTGGAGGAGTTCTTCTCTGCAGTAGGGAAGGTGAGAGATGTGAGAATGATCTCGGACAGAAACTCCAGGAGGTCGAAGGGCATTGCCTACATTGAGTTTGTGGAAGCCAACTCTGTACCTCTGGCGATTGGGTTGACCGGGCAGAGGCTTCTGGGAGTGCCAATCATTGTACAGGCTTCACAGGCTGAGAAGAACAGGGCTGCTGCGATGGCCAACAACTTGCAAAAGGGTAATGCTGGCCCAATGAGGCTGTATGTTGGGTCTTTGCACTTCAATATCACAGAAGACATGTTGCGGGGAATCTTCGAGCCTTTCGGAAGGATTGAAAGCATTCAGCTCATGATGGACAGTGAAACTGGTCGCTCCAAAGGGTACGGCTTCATCACGTTTTCAGATGCAGAATGCGCTAAAAAAGCTCTGGAGCAGCTGAATGGCTTCGAGTTGGCCGGCAGACCTATGAAAGTTGGTCATGTGACCGAGCGCACTGATGCGTCCACGGCCAGTTCATTCCTGGACAGTGACGAGCTGGAAAGGACGGGGATTGACCTGGGAACTACTGGCCGGTTACAGCTGATGGCCAGACTTGCTGAAGGTACAGGTCTGCAGATCCCTCCGGCAGCACAGCAGGCCCTGCAGATGAGTGGCTCAATCCCGTTCGGCGCGATGGCAGCAGTGACTGATTTACAAGCAAGGCTGACCCAAGCCCCTGAAGCTGCTGCTAATCCTGCCTTGAATCTGAACCTGAGCACGGCCTTGAATTTACCAACGCAACCACTGGCAACCCATTGCTTTCAGCTGTCCAATATGTTCAACCCTCAATCtGAAGATGATCCTGGCTGGGATGTAGAAATCCAAGATGATGTCATAGAAGAGTGCAACAAACATGGAGGAGTTGTCCACATCTACGTAGACAAAAATTCACCTCAAggcAACGTGTATGTGAAGTGTCCAACTATCCCTGCGGCGATGGCTGCTGTGAACGCATTGCACGGAAGATGGTTTGCAGGTAAAATGATCACTGCAGCGTATGTTCCTCTCCCAACGTACCACAACCTTTTCCCGGACTCTGTAATGGCTACTCAGCTCTTGATGCCTTCCCGTCGATGATTCGTCCAAAACCGTTGCTTTAGTCGAGTGCCCCTTGGTTGGACCGTACATAACtgaaagcattttctttctttggctCCCCTTTTTCTGTGCAATTTGGAAAGGCACTGATCTGCGATTTGATCGGGTTTCAACTGGACTTGAGTAGCAAATTGCTTCAcagaggtttatttttatttcttttttttttattttcttttcaaaaggaGAATCTAAGCCTCACTCTCATGAGACCTGTAATATTGTGaaataagttttattttcttatgtgacATTTGCAACGATAGTATGAAATTTTTGATTAAAacgcaaaaacaaaatggggcTAATCTGAGTAACTGAATACCGCAATCCTGAGTTATTTGGTCGAATATTGTGCAAGAATGTCAGACATACTGAAGGGACTGCAGTTTCATGTACAGCTTGCCTAATGTTGGTCTCGTCTGTTGGCCATTTTATCATATCtcttgtaaatgttttgttgtacATACAGTAGTCTCGTGCTTCATAGGTTTTTGGACAGGCGGGTATGTTGCATTTCTTTACTGGTAGCGTGTACAGTTGAAAGCGTAAGATTTTTATACCTGTAAAcatcaaaaaaaagaaacaatcttACGAAAgctgttttagtttagttttgtttcttttccaggagaggggaggggaaaaaaagtgcaatGATACTTGTCTGTCTGCATATTGtgttctttaatgttttaagcTCTATGAGCTCTGGAGACAAAATGACAGATAATTCATTTGTGTTAATTTGAAGAGACCACCTGGTATTTCTATTAAGTAACTGTTTTTTGTAATCaagatttgattttgtaaagaaTTCTTGATTAAAGTTCCTTTCAAATAAAGTGGCTGTGGTGGTCAGTCTAGTAACTTAAtgctttttcttccctttcttaAGTGGTTTCATTGTATGtgtcaaacattttcttcaggtGCTTTCATTACTTTGTTTTAGAGGTCTTTCAGGGGATACATAAGCAATGTCATGGTTATTTTAAGGGTTCATAGCTGAGTAGACTGTTTTACTAATCAGATTGATGAATGCAGAATTCTCCTGGGATCTGTCAAGTTTCCCCAAGAGTTGAAA

Function

GO: NA

KEGG:

id description
K13091 RBM23_39; RNA-binding protein 23/39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 312876 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 317759 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 332636 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 384670 38855548 ~ 38855777 (-) True G27668
TU34601 lncRNA downstream 460695 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 196810 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 505700 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 532316 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 584101 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 584101 39842331 ~ 39847044 (-) False G27949
AMCG00007995 mRNA downstream 3965 39221082 ~ 39236482 (-) True AMCG00007995
AMCG00007997 mRNA downstream 27092 39206307 ~ 39213355 (-) True AMCG00007997
AMCG00007994 mRNA downstream 35540 39172488 ~ 39204907 (-) True AMCG00007994
AMCG00007992 mRNA downstream 90188 39113711 ~ 39150259 (-) True AMCG00007992
AMCG00007993 mRNA downstream 148552 39088557 ~ 39091895 (-) True AMCG00007993
AMCG00007999 mRNA upstream 11737 39269967 ~ 39289998 (-) True AMCG00007999
AMCG00008000 mRNA upstream 42414 39300644 ~ 39306779 (-) True AMCG00008000
AMCG00008006 mRNA upstream 207341 39465571 ~ 39472392 (-) True AMCG00008006
AMCG00008015 mRNA upstream 224356 39482586 ~ 39489763 (-) True AMCG00008015
AMCG00008018 mRNA upstream 255236 39513466 ~ 39517267 (-) True AMCG00008018
TU34691 other downstream 148692 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 184768 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 190850 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1075905 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 1148569 38085929 ~ 38091878 (-) True G27502
TU34865 other upstream 242091 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 1757929 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1941259 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2588703 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3502774 42761004 ~ 42764654 (-) True G28581

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000146_01864205_01873634.mRNA True 1417 mRNA 0.52 11 CI01000146 1864205 ~ 1873647 (+)