RNA id: AMCG00007997


Basic Information

Item Value
RNA id AMCG00007997
length 3182
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00007997
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39206307 ~ 39213355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTGTAACTACTACTTCTCTTGTGTCCTGTTTTCCAGATGGCTGCACAGTGCGTGACCAAAGTAGAGCTCTCGGTGTCCTGCAACAATCTCATCGACAAGGATGTGGGCTCCAAGTCAGACCccctgtgtgtgctgctgcagaGCACCGGCGAGGACAAGTGGGTTGAGGTGGACCGCACAGAAAAGATAAAGAACTGCCAGGACCCCGAGTTCTCCAAGAAGATCCGGGTGGACTACTACTTCGAGAAGGTGCAGAAGCTCAAGTTCGGGATCTACGACATCGACAACAAGTCCACGGACCTCGGGGACGACGACTTCCTGGGAGGGTTCGAGTGCACTCTGGGGCAGGTGGTGTCCAGTAAGAAACTCATCAGGCCCCTGGAGCTGAAGAAGGGGAAGCCAGCAGGAAAAGGCACCATCACGATTTCAGCGGAGGAGATCAAAGATAATCGGGCCATCGTGCTGGATGTTGAAGCTCGGGGTCTGGACAAGAAGGACTTGTTTGGAAAGTCGGATCCCTTCCTGGAGTTTTTTAAGCAAGCAGACGATGGCAAGTGGCAGCTGGTTCACAGGACTGAGgtGATCAAAAATAATCTGAATCCAACATGGAAACAATTTTCAGTCTCCCTCCAGACCTTCTGCAACAGCGACCTGAACAAGCCGATCAAGGTGACTTGTTACGATAAGGATGAAGATACCAGTTCTGATATAATAGGGGAGTTTACTTGCACTGCTGCTCAGCTGGTGGAGGTGAAAGATCACGCGGTCCATTGCTCTGATTATGATAGTGATGGCTCTCATGACCTTATCGGTGTTTTTGAAACTAAAGTGTCACAACTGCAGAACACAAGCCTCTCTGCACCGGTGGAGTTTGACTGTGTGCACCCcgagaagaagcagaagaagaaaaactacAAGAACTCCGGGGTGGTGAAGATCAGGTCCTGCAAGATCGTGGCGGATTACTCCTTCCTGGATTACGTCATGGGAGGCTGCCAGATCAACTTCACGGTGGGAATAGACTTCACCGGGTCGAATGGAGATCCTAAGTCCCCGGACTCCCTGCACTACCTGAGTCCAAACGGGCTGAACCAGTACCTTTCCGCCATCTGGTCTGTGGGACAAGTGGTCCAGGACTACGACACTGTGGGCCGGTACATTTTGGGCGCAGGGGAGCTTGAccctGTGTCCCATGAGTTTGCGCTGAACTTCAACCCCAGCAATCCCTACTGCCAAGGTGTGCAAGGCATTGTGGAGGCCTATCGCTTTGCTCTGCCCCAAGTGAAGCTGTACGGACCCACCAACTTCTCCCCCATCATCCACCATGTGGCCAGGTTTGCGGCTCAGGCCGCTCAGCAGGGAACAGCAGCACAATACTTCGTGCTGCTGATCCTGACTGACGGTGAGATCACCGACCTGGACCAGACACGGCAGGCGATCGTGGCGTGCTCCAAGCTGCCGATGTCCATCATCATCGTGGGCGTCGGGGAGGCCGACTTCAAGGCCATGGAGTTTCTGGATGGGGATGGTGGTGTCCTCAAGTCCCTCACAGGAGAGCCTGTGGCCAGGGACATTGTGCAGTTTGTGCCCTACAGGGACTTCGTCAGTgcACCTAAAGAGGCTCTTGCGCAGAGTGTGCTGGCTGAGGTTCCCACTCAACTGGTGTCTTACTTCAAAATGCTGAACCTGGCACCAGTGCAGCCGCCAAAGCCAGTGACCCAGTGAGGCACCTCATGGGCAGCAGCCGCCTCAAAATGTGCCTCGCATTCTTGACCACAAGGCGGCGTCACCCAGCTCAAACAGCACTGCTGAAGACGAGGGAATACATTCACCCGCCAGCCCGGTCTGGTTTTACAATTTGCCACTATAAGTAATTTAGAGAAGCTATAGATtatattccattattttttacatttttgtattacaaactaggaaatttgattattttgcagtattttttaGGGAGTAGATGAATTAAGGGCTGATCTTGCACAGGAGAGTGGATTCTGAACCCttaataatgcacattttagtGTCAATTCCACAATCATGGCTTAATTAGCCTCTAAAGCTTTGATTGTAACAATGGGCAATCTCTTAAAGCGATGCAATATTCTGTGGGAATTTACTTCCTATTAATATGCAGCCTAGCACTTAATCTAAGTTATGCACTTGCTTATATAGTCATTAGAAAGCCTTCTCTTGCGCACAATTAGAACCAAAGACGCGCAGCATGCCTTACTAAACTTTAGCTCATCAGGACTAACTGCCTTATAAACTGAATTGCCAATTCACCGGATCAATGGAAATATTGTATGCATGACACACTTTAGTCCAAAACCACGCGTGCGACTCCTGTCAGAAGACGAGAAGACCTTCTCCCCGTCAAGCGACGCCAACAGCGAGGGGTATCCCACGCACGTCTGTGTAACGAAATGCATATCCACTGCGTTATGCTTCAGAATGTGCCATTTGCCAAATATCTGTGTAAtctgttcagttttgttcaGCTTTTGAATACCATTCTGTGGACCATTCAGTTTTTTCTGATGGTGGGGGTGGAGCTGTATCCAGGCCATATCATTTGAAAGATCACATGCATTCCTTTTCTGACTCATTCAAATCGAGAGTGGTTGCATCGCACAGGATGGCAGCACGATGACCAGTACTGTAGATGACCGATCTCTACGGCCTGCTGTCCTGCTGAAATACAAGGGTCGCTTTAGATATGGCCGTTTGACAAAGGGTCGCCTTGCTTTTGAAGTGCAGGCAGCAGAATTGCAGTTGAAGTCCAGTAATCCTGTATTCCCAGCTCGTGTGGGTTTGAAGCATCCCCTGAGTGTCTGGTCCTGTTTCTTGCTCTCTTTCCAAAGGAGTGCTCTGGCCTGTTAGCCTTAATTCCCACCATCAGAAAACATCTCATTTCTGAGGGGagaaactttttattttatttttatatatataaatatcattgACATTTGTGCCTTAAACAGACACACTTCCGTAGTCTGATTTGAATGCAGCAGAATGAAAAACCTTCCCTTCcctctattttctgtcattgttaaaatggatgcattaataaatatttgtacctGGAGGTCAGAAGTGTTTCCATTCTTCTTTTATGTATTatctttattgtatttctcaGTGGGAGTTAAAGTATGAAGTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 278736 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 283619 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 298496 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 350530 38855548 ~ 38855777 (-) True G27668
TU34601 lncRNA downstream 426555 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 241685 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 550575 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 577191 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 628976 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 628976 39842331 ~ 39847044 (-) False G27949
AMCG00007994 mRNA downstream 1400 39172488 ~ 39204907 (-) True AMCG00007994
AMCG00007992 mRNA downstream 56048 39113711 ~ 39150259 (-) True AMCG00007992
AMCG00007993 mRNA downstream 114412 39088557 ~ 39091895 (-) True AMCG00007993
AMCG00007989 mRNA downstream 128209 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007990 mRNA downstream 156987 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007995 mRNA upstream 7727 39221082 ~ 39236482 (-) True AMCG00007995
AMCG00007996 mRNA upstream 27092 39240447 ~ 39258230 (-) True AMCG00007996
AMCG00007999 mRNA upstream 56612 39269967 ~ 39289998 (-) True AMCG00007999
AMCG00008000 mRNA upstream 87289 39300644 ~ 39306779 (-) True AMCG00008000
AMCG00008006 mRNA upstream 252216 39465571 ~ 39472392 (-) True AMCG00008006
TU34691 other downstream 114552 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 150628 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 156710 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1041765 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 1114429 38085929 ~ 38091878 (-) True G27502
TU34865 other upstream 286966 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 1802804 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1986134 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2633578 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3547649 42761004 ~ 42764654 (-) True G28581

Expression Profile