RNA id: AMCG00007998


Basic Information

Item Value
RNA id AMCG00007998
length 1581
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00007998
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39238048 ~ 39239628 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATgtttgctgtacattttttgAGCCACTTTGCCACCCATCTTGAAAAAGGCCAGCGGGGGGTGATGCGCAGGCTGAGAGCGGGGACTCTAAGCCATTTGCCCAGACTGGTGCGCAGTGTGAGCgatgtgggtctgtggcccccaGTGGTTCCCTCAGGCGCAAGTTACCAGTTCACAGCGGCACCGCAGAGGAGGTACAGAGCCAAGGCGCAGACCAGCCAGATGTCCATTTCCCAGGTGAACCATACGTTGAAAGCCAATGAATACAGCTACAAATTCCATGAATATGAGGGGAGGAATGCCAGCTCGGTGCTGGGGTTTGACAGCAACCTCTTGGCCTCCAATGTGCCCAGCGAGGACCGGCGCAGTGCGGCCACATGCCTGCAGACTAAGGGCATGCTGTTCGGGGTGTTCGACGGGCACGCTGGCTCTGCGTGCGCGCAGGCCGTGAGCGAGCGGCTCTTCTACTACATCGCCGTGGCACTGCTGCCGCTGAAGACGCTGATTGACATCGAGGAGGCGGTGGAGAACGAGCGGCCCCTGTTCCCTGTGCTGCAGTGGCACAAGCACCCTAATGACTATGTCAGCACTGACTCCGGCAAGCTGTACTTCAACAGCCTGCGCACCTACTGGCAGGAGCGGATCGACCTGGACGATGGCGAGGACAGCCGGGACATCCCAACTGCTCTGGTGGACGCCTTCAAGCGACTGGACAACGACATCTCCCTGGAGGCGCAGGTGGACGAAGGGGACCCCTTCTCACACTGCACACCACTGCGCGTGGCCATATCGGGGTGCACCGCTTGCATCGCACACCTGGACGGAGTCGACCTGCACGTGGCCAACGTTGGGGACAGCAGGGCCGTGCTGGGAGTGCAAAATGACGATGGCTCCTGGACTGCCCTGACCATCAGCAACGACCACAACGCGCAGAACCCAGAGGAGCTCTGGAGGGTCCGGTCGGAACACCCGGCCTTGGAGGAGAAGACTGTGGTCAAGCATGAccggctgctgggcctcctcaTGCCCTTCAGGGCATTCGGGGATATCAAGTTCAAATGGAGCAGCGAGCTCCTGAGCAGGGTGCTGGAGACCCGGCCCGAGCTGCTGGCCGGGAACGAATATGCCAAGATGCTCCCGGCCAACTACCACACCCCACCCTACCTCATCGCCGAGCCCGAGGTCACCCACCACAGGCTGCGGCCTCAGGACAAGTTCCTGATCCTGGCCACGGACGGGCTGTGGGACCAGATGCACAGGCAGAACGTCATCCAGGTCATAGGAGAGCACTTGACCGGCCTGCACTGGCAGAAGCCCATATCAGGCCTGTCCTTCACCCTGGGCCAGATGCACAGCTTGCTGGTGGAGAGAAAAGCCCGGGCTTCGTCTGCATTCGAGGACCACAACATGGCCACACACTTAATCAGACACTGTCTAGGAGGCGACGGGTTCGGCATGGTGGACCGCAGGCGGCTGGCCAAGATGCTTAGCTTACCCCCAGATCTGTCCAGGATGTACAGGGATGACATTACAGTCACTGTGATCCAGCTAAACACTCCCGTCATTCAGACACATTACTAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K01102 PDP; pyruvate dehydrogenase phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34734 lncRNA upstream 29755 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 29755 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 178314 39059531 ~ 39059734 (+) True G27709
TU34673 lncRNA upstream 182421 39054539 ~ 39055627 (+) True G27708
TU34617 lncRNA upstream 329866 38906054 ~ 38908182 (+) True G27670
TU34770 lncRNA downstream 26794 39266422 ~ 39266673 (+) True G27781
TU34781 lncRNA downstream 51340 39290968 ~ 39291221 (+) True G27788
TU34870 lncRNA downstream 270783 39510411 ~ 39592411 (+) False AMCG00008007
TU34891 lncRNA downstream 300754 39540382 ~ 39541917 (+) False AMCG00008010
TU34873 lncRNA downstream 341151 39580779 ~ 39592411 (+) True AMCG00008007
AMCG00007991 mRNA upstream 125049 39104175 ~ 39112999 (+) True AMCG00007991
AMCG00007985 mRNA upstream 168742 39060647 ~ 39069306 (+) True AMCG00007985
AMCG00007987 mRNA upstream 185128 39050962 ~ 39052920 (+) True AMCG00007987
AMCG00007986 mRNA upstream 225197 39004001 ~ 39012851 (+) True AMCG00007986
AMCG00007980 mRNA upstream 312377 38921036 ~ 38925671 (+) True AMCG00007980
AMCG00008001 mRNA downstream 137350 39376978 ~ 39378054 (+) True AMCG00008001
AMCG00008004 mRNA downstream 172062 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008005 mRNA downstream 206442 39446070 ~ 39455574 (+) True AMCG00008005
AMCG00008003 mRNA downstream 217035 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008002 mRNA downstream 233188 39472816 ~ 39482333 (+) True AMCG00008002
TU34527 other upstream 529133 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 801453 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 825119 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1067987 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 1091198 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 263451 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 592761 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 817004 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1001684 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2753231 41992859 ~ 41993377 (+) True G28395

Expression Profile