RNA id: AMCG00008001


Basic Information

Item Value
RNA id AMCG00008001
length 1077
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00008001
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39376978 ~ 39378054 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAGTGATTCAACCCAAGATGCTTCCATTGGATTGGGAGCTGAGGAAGGGGACGAAGTGTTCGGGTGCATTCCCCCCAACAAGGACCCCAACTGGTGCAAGACTCCGACCGGACATATCAAGAGGCCGATGAATGCCTTCATGGTTTGGTCACAGATCGAGAGGCGGAAAATCATGGAGCAGTGGCCGGACATGCACAACGCAGAGATCTCGAAACGCCTGGGCAAGAGGTGGAAGCTGCTGCCAGACTACGAGAAGATCCCCTTCATCAAGGAAGCTGAGCGGCTGAGACTGAAGCACATGGCAGATTACCCCGATTACAAGTACCGGCCCAGGAAGAAGAGCAAGTCATCGGGGCCCATCAAAGCAAGCGAGAAGCCGCCCCAGAAGAAGTCCTACCCCAGCCGCtccaccaccagcaccaccaccagcaccacTAGCAAAGTGCTCAAACTCAAAACCTCTGCTTCCAAACACAAAGTGAACCTTACCAGCAATAAACACAAGAGCTACGACGAGGACATCAGCGAAGACGACGCCATGGATGTAAAACCGTCGATCCCGGTGGCAGCGACGCAGAACGACCGGGAGCCGCTGAACCCCGTCCTCAGTCCCTACCATCACCAGCAGCTTCCCCAGCCCCCACTGGAAGACACCCCCGTCACCACACCCACCAAACTCGCAGCCCCCGCGCCACAGCCAGCCCGCCCTGCCTCCCCGCCCTCGGAGGCGACTGCGCCGGAGGACGTGTGCCGGGCCTCCAGAGAGCCCAGGCTCCCCAACCACAGAGCCTCCCTCAGCGGCAGGTCGTCTACGCCAACCTCCACCAGCTCCTCCTCTTTCGTGTCGTCCGCTTCCTCCGACGAGGAACTGGACGAGGAGATCTTGCACATCATCTCCGACTTTGACAGCGTGCCCATGGACTGCTCTGCTCTGGACAAGGACTTTGACGCCTTTCACGCCAACTCAGGATCACACTTTGACTTCCCCGACTACTGTACGCCGGAGGTGAATGAGATGATTTCCGGGGACTTGCTCGTGCCCAGCATTTCCGACCTGGTGTTCACTTACTAG

Function

GO: NA

KEGG:

id description
K23581 SOX4; transcription factor SOX4 (SOX group C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34781 lncRNA upstream 85757 39290968 ~ 39291221 (+) True G27788
TU34770 lncRNA upstream 110305 39266422 ~ 39266673 (+) True G27781
TU34734 lncRNA upstream 168685 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 168685 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 317244 39059531 ~ 39059734 (+) True G27709
TU34870 lncRNA downstream 132357 39510411 ~ 39592411 (+) False AMCG00008007
TU34891 lncRNA downstream 162328 39540382 ~ 39541917 (+) False AMCG00008010
TU34873 lncRNA downstream 202725 39580779 ~ 39592411 (+) True AMCG00008007
TU34902 lncRNA downstream 226558 39604612 ~ 39604828 (+) True G27881
TU35006 lncRNA downstream 579933 39957987 ~ 40003700 (+) True G27960
AMCG00007998 mRNA upstream 137350 39238048 ~ 39239628 (+) True AMCG00007998
AMCG00007991 mRNA upstream 263979 39104175 ~ 39112999 (+) True AMCG00007991
AMCG00007985 mRNA upstream 307672 39060647 ~ 39069306 (+) True AMCG00007985
AMCG00007987 mRNA upstream 324058 39050962 ~ 39052920 (+) True AMCG00007987
AMCG00007986 mRNA upstream 364127 39004001 ~ 39012851 (+) True AMCG00007986
AMCG00008004 mRNA downstream 33636 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008005 mRNA downstream 68016 39446070 ~ 39455574 (+) True AMCG00008005
AMCG00008003 mRNA downstream 78609 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008002 mRNA downstream 94762 39472816 ~ 39482333 (+) True AMCG00008002
AMCG00008008 mRNA downstream 116791 39494845 ~ 39503019 (+) True AMCG00008008
TU34527 other upstream 668063 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 940383 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 964049 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1206917 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 1230128 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 125025 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 454335 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 678578 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 863258 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2614805 41992859 ~ 41993377 (+) True G28395

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02311430_02312497.mRNA True 2073 mRNA 0.42 1 CI01000306 2310592 ~ 2312664 (-)