RNA id: AMCG00008005



Basic Information


Item Value
RNA id AMCG00008005
length 630
RNA type mRNA
GC content 0.66
exon number 4
gene id AMCG00008005
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39446070 ~ 39455574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCTCTGCTGTGTCACAACGAGAAGACGAGCAGAGATGCGAGAATATCCAGCGTCTGTTTGTTGTTCTTGCCCCAGCGCCCGGCCCGGCAGAGGACCGGTGTCCTGATGCGGGGAGTCTGCAGTCCCAGCACAGCCAGGTGTTTCTCCCCCGGTGGTTCGCTATCACCATGGTGATGGGGGGCCGACGACGAGGGATCGACACAGTGCCCCTGTCATGGTTGGTTGCCATGGCGCCGCTCGGTTCCGTTACCAGGGAGTCGAGGCCCCCCGGCCCCCCTAGAGCCGCCGGCAGGATTAACCTGTGTTCCCATGATGATACTGCTACTGGAGGAAGAGGGGCGTTTGTGGTGCGGCGTGCCAGGCAGGAGAGCCAGGCCGACTGGACGGGTCTGAAGAGGAGGCCTCGGCGCCAGGGGCCGTGCCCAAAGTTGGGGCATCTGAGCCCAAACCGACCGCGACCCCGACCCCGCACCGCCCAGCGGGAATCGGGAACAAAGAGTCGCCACAGCCGCCGCTGCCACCCGGGCATCAGCCGTGCGCCCGGCCGCCAGCTCTCCAGCACCGGGACGTCCACTCTCCACTACCGACTCCCCCCAACAAAGCAGGCGGCCCTCCCGGCGGATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34781 lncRNA upstream 154849 39290968 ~ 39291221 (+) True G27788
TU34770 lncRNA upstream 179397 39266422 ~ 39266673 (+) True G27781
TU34734 lncRNA upstream 237777 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 237777 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 386336 39059531 ~ 39059734 (+) True G27709
TU34870 lncRNA downstream 54837 39510411 ~ 39592411 (+) False AMCG00008007
TU34891 lncRNA downstream 84808 39540382 ~ 39541917 (+) False AMCG00008010
TU34873 lncRNA downstream 125205 39580779 ~ 39592411 (+) True AMCG00008007
TU34902 lncRNA downstream 149038 39604612 ~ 39604828 (+) True G27881
TU35006 lncRNA downstream 502413 39957987 ~ 40003700 (+) True G27960
AMCG00008004 mRNA upstream 32295 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008001 mRNA upstream 68016 39376978 ~ 39378054 (+) True AMCG00008001
AMCG00007998 mRNA upstream 206442 39238048 ~ 39239628 (+) True AMCG00007998
AMCG00007991 mRNA upstream 333071 39104175 ~ 39112999 (+) True AMCG00007991
AMCG00007985 mRNA upstream 376764 39060647 ~ 39069306 (+) True AMCG00007985
AMCG00008003 mRNA downstream 1089 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008002 mRNA downstream 17242 39472816 ~ 39482333 (+) True AMCG00008002
AMCG00008008 mRNA downstream 39271 39494845 ~ 39503019 (+) True AMCG00008008
AMCG00008013 mRNA downstream 53885 39509459 ~ 39511872 (+) True AMCG00008013
AMCG00008012 mRNA downstream 56699 39512273 ~ 39512791 (+) True AMCG00008012
TU34527 other upstream 737155 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1009475 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1033141 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1276009 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 1299220 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 47505 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 376815 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 601058 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 785738 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2537285 41992859 ~ 41993377 (+) True G28395

Expression Profile