RNA id: TU34870


Basic Information

Item Value
RNA id TU34870
length 10120
lncRNA type read_through
GC content 0.44
exon number 3
gene id AMCG00008007
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39510411 ~ 39592411 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcacacacacacacacacacacacacacacacacacctgcgcGCGCACACGCACCCACACGCACGGAACTGAAACACAAAGGAACACTACAGATCTACTGTCATACTGGTACCTGGAAAAGAACATAAACTCTGGATTAAAGAACATCAGAACACTcccattgtgtttttcatttgatgtacATTGATGTCCCTACTGTGaaaacattcatacaaaatgtgttccACTCCTCCCgtggattaaaaataatgtatatactatataatactCAGACCTGGTGACAAGACTGCAGCTCATTTTTCTTGGGTTTCTCAGTCTTGGATGGGAGAGGATTTAAAGCAGTTCATCTTCAATTAAATTCCCCTTTAAACGATAAGcatttgtaaatcaaaatgGTGGTATACCATACTCCTATGAAACATACACGCACActgtttacacaatatatatactggAAGTCCGAGGGGGAGGGAAATGGCACGCATTGAGGACGGCACACACATACGGCACACTCGCGCACAGGTTGGGATCATGTGAAGACGTGCGCGAGCTGCACCTTTGAACACCATTCTTGGCGAAAGCAGCACCTGAATTCATACTGGAGTACTAATATGCTGATGAGCTCGGCCTCAACAACAGTCCATAATTTAGAAAAGTCCAAATTgataagaaacaaaactaatgaaAGCCAAGCAATAactatgtttgttttttcttactacactgattttgttaattcaattaGGGAGTATAACTTAAAGATTAAAACCGAAAAGAGGATGTGTCACCTTTCAATGTAAAGTGCTGTGGCTCGTTGGTGGGTTTCGGCCCAGGGTGAAGGATGGATGTAGACTGAGCGTGTCTGAGTTATAAACAAACTTGTTTATCTGCAGGGTCAAAAGCACAGTTTAGTCAGAGTCTCAAACATTCAGTCTCATACATGCAAAGACTTGCAACCCACACATTGGAATGAACTGACCCTGTGCTCTTATTACCTATATTTCAAAATCAGATGTTTAAATTGTAGTCTGTTAGTTAACAGCAATGCAATgggtatatatacatttgaaatgttggcATCAACAAAAGGGATAACCTGCTTTTTGCTTGTACCCCCCTACCCCCAGTCGGGTAGGGGCAGTTAGCTGCCTTACTTACTACAGTTCGGTTGTGGAGTGCAACACCTGGGAACTGTTGattctgctgtgtgtgtgtgtgtatgtgtgtttttttccatattcacagtagtgaaagaaaatacatttctcctttttttagCCAATTTTGGCTTCCTCTCCCATCTCCCTCCACTCCCTGTGAAACCCCTGTCTTTTTCCTTGCAGTTGGAGCTCTGGAACTTCAAAAGGGGTTTTAATATATCGAAAGACAAAGCATTTATTCACACTATTAAGCATTCaattaaagagaagaaaacaacacctttttttttttggtaatcaGTTTATCTGCAGCTAATGTCAAATGCAACACATGGCATATGAACACAGTGCTGAAACCGTCTGTTTTCAGCATCACGTTTTTGTCCCCTAGTTAAAGATTACAGAATAAACCTTTGATAAACTGATCGATCCTAGAGCTATCATTGATTGACTGGTAaaacgaaagaaagaaagaaagcaaaaataaacaaccccccccaaaaaaatgttatattaaaaaccCTTGTCTCGGAtgataagaaaaaaacacacttcaaaacaaacaaaacaaaccataaaaaacaTCTTGACTAATCAAATACTGGATGCCGATAAAACACTTGATTAGATTAAAGTACTACCTCTGCAGGACAATGTGCATGCGTTGAGTTTTACAAACTAACTGGTCTGGCGCTCTGCTGTCGCTGTGGCAGCAGGCATGACGCAGCGCCCCTCCGTCAGGGTGAACAGGAGAGTGGGATGGGAAAGGTCCTCTGCCCACTGGTGGGTGAACTGATCCAGTTTGTGACCCTGGCATAGTGGGAAACGCTGTATCTGCACCTCGTCACCAGTCATTGGACCAGAGCTGCTGTGGACAGACATGCATCTGCTTCAATGGAAATCATCTGACAGGAATTTGGATAACAGAGGGCAAACTTCCAAAGAATCCAGggaattcacacacacacatgcacatatatatatatatatatatatatatatatatatatatagttgatcATTTATAATGTTTCAGAGCccttttttgttagtttttttgcatgCAATTTCTGAACAGGGATTCATCAAATGGTTGTATTCAGAAGGAGAAGATGAGGAATACAGTGCTGGCaatgcagagagacacactgccTGACTGGACGGCTGCTGTGGTGAATACTGATGCCCCGCGCACACGCAGCTCCGAGCGGCCAgttttaaacacagacacaaagagcaACGGCTTGCAAGCGGCGGGGGGGATCTTGCGGTCCGAGCCATGCCGGGCCCGACTCGGGGGGGGTGCAGCGGGGCTGAGCTGCCTGCCTGACACAGTTGTCCAGAGTCCAGACCAGTACTGGAAGCGCTCGTTTATAGTCTTTGATCAATACTCAGAATTACACCACTACCACGTGTACAGTGCTGGGGGAACAGGGGGAGACTCTGCTactggggagggagggatggcATGAACAACATGACACCCAGCCAGGGCCGCACATTTTGCACCCCCGCAGCACTGGAGAAAATGCTGGGCTTTACAGGCGATGCTGTAGTGATGCAAAATCTTTGGCCTTCTCTGTACTGAGCTGGGAGGTCGAAGGACCCAGACAAATACAACAGCCCCTACAAAGTGTACCTATGCATAgcagctttttcattttatttgtatttcttttagaAGGTCGGCACGTCGTCCTGTTCCCTACGCATCACCGTTCTCGAAAAGCAGTACTTCCAGATTcagctaaagaaaacaaataaaaataaaacctacttCGAGGTATTTCTAAAAGTGCAATGCCAAGATACACTTTAACAGTCCGTCCGGGGTCAATGCTACGGCTGGCTCAGCTCTGGCTCTAAAGTTGAACAAGTTTGAACAAAACCCACTGCAGCTGCTCAGTAGACCCTGCTGCTTGCTATAGGTTTCACATTGTGTTGGAGAATATCATTCTCTTTGTTGTCCCCTCTTTCCACATTGAACATCAGTTTCACACTCTGTGTTCCCGCCTGAGAGTGTCAGACCATTACAATAACCTCTTCACCAAACCAGCTAAATGCACCTCAACAAGCTGCAATACCATCAGGCTCCACCAGGGAGAGCAATTTTCCCTAAATGACATGCGCTGCAGACACAACTGTGACTCCTAACGAAGCAAAGgtacatttcacattattttacaaagttCACGTTCCCCCTACTTCTACATTAGTATCCTTCAGTACCTTCACATGCCAACATCCAGGGCTAGCCCTGTATAAAGTGCttttctgtgtctctccagCTGGATGCACACCAGGGATGTTTTCTTCCACTAAGAAACCAAGTTCATGGTTTCAGAGATCAGAGGCAGGACATCAGCACTGAGTCTTGAGACACGTGTGCCGCTGTAGTCTCTGAAAAGTTTTAGGCAtcaatacaacaataaaatctGATATAATAGATTGTATAatgagaatataaaatataatactttaaCCTTTGTTCAATAAATTTCTTCTCAAGCAAAGAACGATACAGAATATTGCACTTTTATCCCAAACATCTGCTAGAACAATCAACTTACTTTCCCTGTCTTCCAGTACCACACTAGAACACTACAGAGCAAAGGACAATACtctgatagatagatatataacTTATACTATTGCTGTGTTAACAAACCCAGATTGCTCACCGGTATCCCAAAccctcactgtgtctctctgtgtctttattAATggatatatgaatacaaaatgaacaacACATTGCCTCTTAACATCACTCTGTGGCTACAGTCATCCCTCATGCCATCTCTCACAAGCCAAGGTGCCCCGTGAGGTCATGTTCCAGTATTCTCTATCTACTACCCTGTGACGTTACATCGCTCACAACCCCTCAGCCAATCAGAACACAGATCCGGAaggcaggttttttttcttttttacattgttttttcacCCCCATGCAATAATTTCATAGATACAATTCATATCACCACAGAAACCACTGATACACTCACTGCTTCAAACACCAAGCAGAACAGAATCaactataaaataaagaaaagataAGAAAGTGAACCACTCCCCAGCCTACAGGAGGCAGAGATCTGTTGATCTACATGACTGGAAGTCATTCCTGTAGGGAGTTCAGGTTTCTAGGTTGTTTGAGTGATAGGGAACCAGAACAACCTTGATATAAGACGCAGTGCAAAGCTCAGCCTACATAGACAAGGTGCTCTGACAGGGTTTAGTGATACGTGCCTTATAGTTTACATAGGAATTGCTCTGCATTGATCAGCACTGTCGAACTGAATCCATGCAGGTGACTGGCACCTGCTGTGTTCTGATAGGCGCAGATCTACCAATCAACAGCAATTTTTATCCAATGATGTGCCTCAATCCTCAGTGGACCAATCCACACCCTCTAACTCCACCGGCCCTCCCTTCATCGCATCCAACCGGTGGGCTCTGCTGGCGCTgctcagagctgctgttctgACATGAGATGAGAGAGGAGCTGTTGCTATGACACATGTAGGTCATCACAGCCACAGGCCTTCCCTGGGGGGACGGAGGAGGTGAACAGCAGTCTGGGGGGGTGGAGAGCAGGACCCACAGAGACAAGGCTGCAGAGAAGAGACTTCAGACCGCTCTGCAAGGGCTAAAAGACGCTTCCAGACAAcgatgaaaataataaacagaactagataaagataaagaaaaggagacaaataaaataagacacgCCTGTTGACTCTCCTAGTCACGCATCTTCTGTCAGCTACCACCCCACTGAAGCTCCTCACAGGTCCTTCCCTGTCCAAGCCCTAGAACCATGACCGTGCCCAGCGCCCATTAAACACATCGCACACAGCCCAGCAGATCTGCCAccctgttctgttctgtttgttaGCTGGTTTGTTCATGTCTCTCTTTGAGAGACTCACCCGGCCAGGATAGCGCAGGAATATTCGACTGTATTGCTACATGTTAGAACATATCTAGTTGATAGCAATTCAGTGAGATCGTGGAACAgcgtttatatatacatatatacgtgGGGCACTTCATTCCACCAGACCTTGCCTGCCAACCCCCAGCCCCTAAGTATTGTAAACTGAAAGCCCTGTCTGTTCTCCACATGGGTATTCATCCACACTGATATGTATTTCTCTGAGAGTCGACCCTTTTCTGGTtttcttatgtatatatatatgttttgtacaCTCTTTTAAATTTTTGTACAGTACAAATTAATCTCTATAGATTAGCAGCATTCTCAAatcataaatattgaaaaaatccTGTTATAAGCAACAACATCTCTTACAGACATACTCAAGAAAACATAAACATCGGTTAGCTTTTGTCAACAACGCTATAAACaaatttttctgttatttattaaaaaaaaaagtgtattgaaatatatatctaGATATAATTAATATTCTCCATCTTGATTCTACTACAAGTGACCAAAGAACAGTTTCTATCAGAGTAGAGATGCTAAATTAAATTTCCCACTTGCTAGTCCTTACTGCTAAGTGTTTCTGGAGTCAGCTGAATTCTTTACAGTTATGAAaactacatatataaaatattgttaatttttgtataaaaataaataaatcatataatgaatgtatgaatccaTATTCCAACCATTGCACATTCCCTTTTAAAAAGTGCCAAACTTATCACATTCCTTCCTGTCCACTTATATAAGTAGGTACAGTATACcaatttaaatattctttttGGAAACataacttgtattttaaaatgagggATTCATGACAATTAAATGATTTTGTTGAGATTGTTTTTCTAATATCCCTGCTATCTGTGCCACATGCataaagaaattatatttttttacattgtttttgtacacAGAATTAGCCGAGGGAGGGGCTCACTTTCTACAATTACACAGCATGTTCCTGATGTTGAATTTCTCAGAATGATGTCTAAAAACAGACAGATCTTTCCTCTCTTTCTGGTCGAATTGACAGCGGTCTACACCCTTCACATATATGAGTGCTGACAGCTGTTTGTCCATCCCAGGCCCTTTGTAATGAACACCTGTACAAAAATGTCCctatcaaaaatatattttcttttcatatggCACCATCAGAAATATTTCTCGGCTACGTATTTGGCAATAGAGCGTGACAGTAGACACTTTCAGAAGCTCTGAAAGGCCCCCAGCCGAACGTATAGTTCAAGCAGcgaaaagcaaacatttcacCACAAGTGGTTTTATTTCACTAGCTGTTGCACATCCAGATTTGGCGGAATTTACTCCTGCTGGTCTGATTGGTTCCACTGCACTCTACCCATGACCACTAGCATCGTCGATCGGACACAATACACCGAAAGACTGTGTGCCGTGTGCAGTGATCTGGAGTCTACATTCCTGTAGAGATGCGggccagtgtgtcagtggtgTGGACCTGTGGATCATTGCTTTTGGCTGCTAGAAATAAACTCCAGCTGCAACTAGCTGCCCAGTGTCCTTGTGACCCCTCTGTGTCTCCAAATGAGGCTGCCAATCCCTCATGAACAGCCAATGAGAGGGCAAGCCACTCAGCCACCCAGTGGGAGCAGTCCAAGGAATCTGGGTGGCCCATGACAGAACTACAAGTTCAGACTTGCCAATAATCAGGAAAATGGCgcctttaaattatgtttttttgcgTTGATTTTTTGGCAAAAGTCTCAAAGTGAATCAATACCCACAGCACAGATCTAAGCAACTAAGTTTTCAtcttttctatttgtttgttgcATGTTACCAAAAATAGAGTTTGATTATGAGaatattattcttgtttctcgctggatttatatatatatagagagagataaatatggatagatagataaataagaAAATCTAATGTTCTGAACTCATTTTCCAGCTCCAATTCTCATAAACCCTGTGATACAAATGAACCTCTGTACTGCAGATTAGCGTCCAGCCCCTCCATCATTCACTTCCACATTTAAAAtgggtgcttttttttttataaaatccaAAATCCTGTAACTACAACAACACCAccaataatcataatcataataataataataataataacaagaagaagaagactgAAAGCCATCTTGCAGTGTTCTGAGCCAACTGTGTACATGGTAAATACATATCTCTGCTAGAAGCTGTTAGTTAGTCACAAAAAATACTATTACTGATATTTAACGATTCATCAGGATTTGTACACTATTTACAGTATATGTCCATGACCTGCAGAGGGGAGGGCGAACCGTGCTGCATTGgaaaacctctctctctgcaagCGGGGCACAGGAACTGACCAGGGTCAGTTAACGATACACCCTCCTCAGGGGCTACAAAATCGACCTGCTATATCTACTCCCTCACCATCGGGCTTTCTTTGGCACCACTGACAACTGGCACTCAGAAGCTGGTGCCGCCATTTGAATAACCGACAGTGAAAGCGATGATTTCTTCTTCTGTGGAGCTGTTTGAGATGTTGACACGTTGCGCAGGCAGTTCTCAGAGTCAGGTTGTGGTGACACGTACATACACaggtaataaatatatatatatctatagcGGCTGTAATGCTAACCTCTGAGGCATGTAAcacctcccctcctctcccccaaACAGAATTGCACTCCCTTTCCCTAAAATAGATCCGTGCTGAGGCGGGGGTCTTGGTTCAGCCCAGTGACCTCCGTGCGTGAGAGCAGTCTTCCTCGGTGCAGTTGGGCACGCTGGGCCCAGCACGCTCTCCCAGTCCCCAGCTTCTCTGCGACTCTGTGTCCCCTCTCAGCAGCAGGGcgttcctttctctctctctctcctgtgtgttaTTCAGCCTCGGATCAAAAAACAAGAGCAACCAAAATGAAACTCTCTTTTGACCGGCTTGCTAATTTCCCTCTTCTCCTGCTCGTTTCTATACCGTTAGAAGAAGAAGGCTACCATCGTGCGGATCAGAAGGGAATGTCCGCATTAAATCAAAGGGTTCCGACGCGGTTTAGCATTTCAAAGACGAGACGGGAGGTGGCGGCGATGTCAAAATCAGAGAgcgagcaggagagagagagaggagggcgCCGGCTGAACCCACTGCGCTCCGCCACTGCCagacctccctgcctctcccttGCTCTCAGAATCGTGCAGCGGCAACTGCTCCTTTAGTTTCACATGCGCTGCTCTCGAGATCCGCAACAGCAGCGCGTCGATGTGCATTTGTCAGCCGAGAGGCTTCACAGGATGCCATTGCATGggcttttttcctttattttttttgttaaatcttgttttctgtaatgAAGATTTCACACCCTCTCATGTGGGAAGTGGCTGTCAGTTCACACAGCAGGCCCACTGTTCGCCCACAGGGGACAAGCTATGTTAACCGGGGCTGCGATCGTCGGCTTGCTTCGGCAGATTTCCTGTTATTACTGCATCAGTAGCGTAAGGAAAGGGAGTCCGCACTCAGAGGGAAATTAGCAAGCCGCTGTTATGGCTGAAACAACACACATGCTGTAGCCCGTATTCAAAAATATTCCAGGGCAGGAGTATCACGCCGTTCCCAAAAAACTTGGGACTTGTTCAGCTGTCTGCAAACATCTACTCAGTTCTCTTCGCCCACTGCTGTTGCTCTCGCTGTCTGCAGTGTCTTTCTCCAGCCTGTGAGAGCTGTGCTGGCTGAATCCTCCATTGGCAGCCTCTCTGGAAAATGTTTCGTCCGGACAGGCGGGCCCGAGGGAAAACAGAGCGACAGCCAGCGATCTTGTGTTCGCAACCCCCCAACCGGACAGAACCCAACCAGACCGACCCACACCAACCCTCCCCCACTTTCTTCCCCAACGTCTGTAGTCGCggaaaaacaattttttttacaaatcgAATGATAAAATGTAAcggaaacagaaacagaactgAACGAAAACAAGACGAGAACGGAACTGAAATCGATCAAAACAAACAGTGGGACCGCCTTCCCTTCCCCCGACCCCTCCCTTGGGCGGCGGAATGATGTGGGTGAGCGGATGGAGGGGCTGTGCCGGGCGGGACAGTGTTCATCGCGAGGGACTGGGGGGGACTGGACAGTGAACCGCCAAAGGGACAGTCCCCACACGCTGCACAGAGGccggggagaaggagagagattcAGGAAGGCAAGGTGGGTAGCAAGGGTGGGTGTTTCACTGGGAGGGCTCAGGGTTGTGCTGGCATGAGATCGAGGACACGGGCAGATGAAGAATATTAAAACGAAGGggaaaaaactacaataaagcTTGGCTTCTCTCTGATCTGCACTTCAGGTTGCTGTTACCTTGGCTGCCTATCATAACGCAGCTGCGGATCTGAAGAGAAAGCTGCCATGAGCCTGTTGTCTTGTGATCAATAGCTAACAACTTACATCACTGAATGGATACTGTTGTGCCATCTCTTTAAGCTTCgtgatacaaaaatgtattgaatactgtatatactgagacaaaaaaaaatgaaaataaaaaaaagcataacgGCGAAACGAAAGGAGCCGGAGACTCACGATTCCTTGCGAACTACCCTCACGAGCTGTGGCCCCTGTGAACTGGCCCCAGGGGGTTTTGTTTGTCAGCTCTGGTAGAGTAGTGAGCGCTGGTCGCATCGTACAGGGGAGAAAGGGACACAGATCGACACCCGGGAGAGAGGATGTAAAGCAATGAGGGCGGTTGGTCGGGAGGGCGATGTCTGAGGAGCAGGTAGGGGGCTGTGGCTGGAATGTGAGGGGTGTAATTGTCCGTGGGGTGAGGGTGCTGGGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGGAGCCAGGCTGGCCTCTCAGGAGTAGATGGTGATGACCTCACGGCCGCCACCACGCACGAGGAGGACCCGATTGAGGCCTTCGGTCAGGACCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34781 lncRNA upstream 219190 39290968 ~ 39291221 (+) True G27788
TU34770 lncRNA upstream 243738 39266422 ~ 39266673 (+) True G27781
TU34734 lncRNA upstream 302118 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 302118 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 450677 39059531 ~ 39059734 (+) True G27709
TU34902 lncRNA downstream 12201 39604612 ~ 39604828 (+) True G27881
TU35006 lncRNA downstream 365576 39957987 ~ 40003700 (+) True G27960
TU35021 lncRNA downstream 459479 40051890 ~ 40060205 (+) True G27973
TU35105 lncRNA downstream 685003 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 1071561 40663972 ~ 40721691 (+) False AMCG00008051
AMCG00008008 mRNA upstream 7392 39494845 ~ 39503019 (+) True AMCG00008008
AMCG00008002 mRNA upstream 28078 39472816 ~ 39482333 (+) True AMCG00008002
AMCG00008003 mRNA upstream 47109 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008005 mRNA upstream 54837 39446070 ~ 39455574 (+) True AMCG00008005
AMCG00008004 mRNA upstream 96636 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008022 mRNA downstream 192413 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008021 mRNA downstream 204924 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008020 mRNA downstream 224616 39817027 ~ 39834952 (+) True AMCG00008020
AMCG00008023 mRNA downstream 250813 39843224 ~ 39848246 (+) True AMCG00008023
AMCG00008024 mRNA downstream 380152 39972563 ~ 39975851 (+) True AMCG00008024
TU34851 other upstream 6034 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 801496 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1073816 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1097482 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1340350 38168570 ~ 38170061 (+) False AMCG00007952
TU34945 other downstream 239978 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 464221 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 648901 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2400448 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3513302 43105713 ~ 43108242 (+) True G28636

Expression Profile