RNA id: AMCG00008008


Basic Information

Item Value
RNA id AMCG00008008
length 1963
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00008008
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39494845 ~ 39503019 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGCGGGGGGCGCAGTGACTCACGCACCGGGAGCCACAGAGAGGCGGCGGGGGGCGGCGGGCCGGGCCGGGGTCGGGTTCTCTGCCGGGGCTCTGTGCCGTTCCGCAGCGCTGGGCGAGCATCCTTCAGCCAAAGACAAACCGGAGGAGAGGCTGCCAGCTGCGTGGGACCCTGGGACGGACGCCGTGTCCTCTCTCACTCATTCTCTCCTACTGTCCCTGCCATCTGGGGGGCAGCTCTGCAGTCTTCACAGTGGGAGTGAAGCCAGCTGACTGGGCTAGTGTCTGCTCTGGGTAGTGAAAACCGCCTCCCCCACAAACGCAGCTCCATCTCCGCTTTGCTGCTCCCCCAACACTCCCCCATCCACTCCACGCTCACGGACACGGGCCTTCCACAATACCTCCTATTGTTGCTTCTGTTTGGCTTTTTCTTCTCCCTGCCCGTGTGGACAAAGACCTACTGCAGGAAGCTCACCTCACAAGAAGAGCTGTGGGAGGAGAGACAAGTCTTCATTTGTTCTTtctgatgtttgttttagtttcttttaatcATCAGCAAGAGGAACGACCAGATTTCATCCAGGGAAAGCATCtagtatttataatatatatatatatatatatatatatttgtttgtttgtttgtttgtttttatttcaagcaAAATACCCCCAAACGTCCCTCCTTTCCAGTTTTGCACTTCAAGCCTGCACAGTGAGTGTGAAGAATAAGAGACACTGTTTCTGCCCCTGGCTCGGCTCCTGTTTTGCTCCTGGAGCAGTGCAAGCATGAGTGCTGAGAGCGGCTGGCCAAGCACTGGCTGTAGGTGCCACTCTGCTCCTATCGGGGCAACAGACCCTGGGGCTCTCAGCTCCTGTCCCAGGCCACAGTCAGGATACACACTATACTGACTCTCATCGTAAGTCTCTATTAACCCAGTGTGGCGTTTATCATGCTTCGTGCAGCAACATCAGAATGAATCCACAGGGAGAGGACTAAAGCGGAACAGAATCTATTAAAATagccacatttaaaataaataccagctgtgataagaaaacaaacagtttgCATATCCTTTTCAGGTACAACAATGCAGTCTTAAGACTTGAAATTTGGAAAAccaggaagaacaaaaaaaaaagaaacaaagtcaCAGATTTTGTTTCTAAGTCAGGTTAAGCTTCAGCTGAAAAGACCCACTTTGGGCTGGCttattgtctgtttgtgtgcgtgtttgtttcatgcgtgtgtgtgtgcttttgtgtggTTTAACTACAGGTTCCTGTCTGTGGAACAAACACAGTGTTCAACGGGCGTTTGTGCCAAGAAGTGGGCTGTTAACCAGCTTGTggcttttctgtgtgttttgcagtcTCTGTCACAACTGATCGCACTGTCTGTGCcgtacaaatacaatacatttaaacacaagtgTGCCAAactaaaaagagagaaagaaggaaaacagaaataataacaataaaaaaacaacaagaacatcTGAAAGAGAGACAGTAAGGAGCCCCGTGTCCAGCCCCCCACGTGTGTGCGTGAACGTGTGTCACCCTCCACATTTCCTGCTTTgtgcctccccccccccactcccaggATGAGTCTGAAGACGGACTCGGAGGGCGAGAGCTCCCAGCCACTCGTGTACaccctggaggagctggagtgCAAGATCTGCTACAACCGCTACGACTCCCGCACGCGCAAGCCCAAGGTGCTGAGCTGCCTGCACCGCGTCTGCGCCAAATGCCTGAAAAAAATGGTGGATGTGGGTGACTCCTCCCCCAGCATCATCAGCTGCCCCTTCTGCCGCCACGAGACGCAGGTTCCCGATGAGGAGATCTGGCTGCTGCAGGACGACAGCAATATCCTGGCCATCCTCACCTACCAGGACCGGGCACGCAAGAGCGGCTCCACCACCCCAGGCGAGGTGGTACTGACGCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34781 lncRNA upstream 203624 39290968 ~ 39291221 (+) True G27788
TU34770 lncRNA upstream 228172 39266422 ~ 39266673 (+) True G27781
TU34734 lncRNA upstream 286552 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 286552 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 435111 39059531 ~ 39059734 (+) True G27709
TU34870 lncRNA downstream 7392 39510411 ~ 39592411 (+) False AMCG00008007
TU34891 lncRNA downstream 37363 39540382 ~ 39541917 (+) False AMCG00008010
TU34873 lncRNA downstream 77760 39580779 ~ 39592411 (+) True AMCG00008007
TU34902 lncRNA downstream 101593 39604612 ~ 39604828 (+) True G27881
TU35006 lncRNA downstream 454968 39957987 ~ 40003700 (+) True G27960
AMCG00008002 mRNA upstream 12512 39472816 ~ 39482333 (+) True AMCG00008002
AMCG00008003 mRNA upstream 31543 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008005 mRNA upstream 39271 39446070 ~ 39455574 (+) True AMCG00008005
AMCG00008004 mRNA upstream 81070 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008001 mRNA upstream 116791 39376978 ~ 39378054 (+) True AMCG00008001
AMCG00008013 mRNA downstream 6440 39509459 ~ 39511872 (+) True AMCG00008013
AMCG00008012 mRNA downstream 9254 39512273 ~ 39512791 (+) True AMCG00008012
AMCG00008010 mRNA downstream 37201 39540220 ~ 39545607 (+) True AMCG00008010
AMCG00008009 mRNA downstream 47057 39550076 ~ 39555822 (+) True AMCG00008009
AMCG00008011 mRNA downstream 65424 39568443 ~ 39570932 (+) True AMCG00008011
TU34527 other upstream 785930 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1058250 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1081916 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1324784 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 1347995 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 60 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 329370 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 553613 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 738293 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2489840 41992859 ~ 41993377 (+) True G28395

Expression Profile