RNA id: AMCG00008009


Basic Information

Item Value
RNA id AMCG00008009
length 1455
RNA type mRNA
GC content 0.56
exon number 15
gene id AMCG00008009
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39550076 ~ 39555822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCCTGCAGAGCTGCCATCCTCCTGTTACTCCCCCTTGTCATCATGGCCACAGGAGAACCACCCAGCTGCAAGATACGCATCACCGCCAGGGGCCTTGAGATGTTGAGATACGAGACGCTGAAGTTTGTGGAGGAAGAGCTGGAGAACATCACCATCCCAGACCTGGAGGGGAAGGAGGGTCGCTTCCAGTACACCATCAAAGAtGTGAAGATCACAGAGCTGAACCTGACGTCCTCAGACCTGCGGTTCCAGCCCGACTATGGCCTGCTGTTCGAGGTGCACAACTCCTCCATCACCCTCAACTTCAAGAGAAAAATCCTCTACTGGTTCTTCCACGACGTGGGCTCCATCAACGCGTCAGCCGAGGGCGTGAACATCCACACCGCGCTGCAGCTGACCCGCGACGACGTCGGCCGCCTCAAGATCTCCAACATCTCCTGCGACGCCGCCGTGGGCAAAATGCGCGCCAAGTTCACCGGCACTCTGGGGAAGGTGTATGACTTCCTGGCGACCTTCATCACCACAGGAATGCGTTTCCTGTTGAACCAGCAGATCTGCCCAGTGCTGAACCATGCAGGGATGGTCCTGATGAATTCTTTACTGGACACAGTGCCCGTGCGCACACCAGTGGACAACCTTGTGGGGATTGACTACTCTCTCCTGAATGACCCCGTGGTGACCTCGAGCAACCTTGACATGAACTTCAGGGGGATGTTCTATGGCCTCCACAATGAGAACGACACCATTGTGAACTATGCACCGGAGCCAGTGGTCCGGGAGTTCGGCCGCATGGTGTACCTGGGTCTGTCTGAGTTCTTCTTTGACAGCGGCATGTATGCCTACTTCAAGGCAGACTCATTCAAGCTGCAGATTGCTGATGAACGGATGCCCAAAGATCTGGAGATGCTCCTGAGGACGACCTATTTCGGCACAATCATGATGATGAACCCGGCCCTGGTGGAGGCCCCGATCACACTGGACCTGGGGGTCACCGAGGCGCCCCGCTGCGTCATCAAGCCCTCGGGGGCGACCGTGTCTGTCACTGCCGTCGTCAGCGTCATGGTTCGACCTCCTGGCCAGCCACCCATCCAGCTCAGCAGCATGACCATGGAGTCCAAGCTCTCCAGCAAAGTATCCATGAAGGGCAAGAGACTGGCCATCCACATGGACCTGAGAAGCATTTGCCTTGGCTTTGGTGCATGTGatCTGATTCCTCTGCAGGGGCCACTGAAGACTCTGCTACAGCTGGTTATCATGCCTTTAATCAATGAGCGCACCAAGAAAGGTGTGCAGATCCCACTGCCAgaggggatggacttcacaGAGGAGGTGGTGGAGTACCACACGGGCTTCATAATCATCGGAGCCAACCTACACTTCAGCAAGGGTCTGAGAGAGGTCATCGAGAAGAATCGCTCCCCAGTCAAGACCAACAGCACCCTGGACTGA

Function

GO: NA

KEGG:

id description
K08761 PLTP; phospholipid transfer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34891 lncRNA upstream 8159 39540382 ~ 39541917 (+) False AMCG00008010
TU34781 lncRNA upstream 258855 39290968 ~ 39291221 (+) True G27788
TU34770 lncRNA upstream 283403 39266422 ~ 39266673 (+) True G27781
TU34734 lncRNA upstream 341783 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 341783 39206381 ~ 39208293 (+) False G27760
TU34873 lncRNA downstream 24957 39580779 ~ 39592411 (+) True AMCG00008007
TU34902 lncRNA downstream 48790 39604612 ~ 39604828 (+) True G27881
TU35006 lncRNA downstream 402165 39957987 ~ 40003700 (+) True G27960
TU35021 lncRNA downstream 496068 40051890 ~ 40060205 (+) True G27973
TU35105 lncRNA downstream 721592 40277414 ~ 40277687 (+) True G28032
AMCG00008010 mRNA upstream 4469 39540220 ~ 39545607 (+) True AMCG00008010
AMCG00008012 mRNA upstream 37285 39512273 ~ 39512791 (+) True AMCG00008012
AMCG00008013 mRNA upstream 38204 39509459 ~ 39511872 (+) True AMCG00008013
AMCG00008008 mRNA upstream 47057 39494845 ~ 39503019 (+) True AMCG00008008
AMCG00008002 mRNA upstream 67743 39472816 ~ 39482333 (+) True AMCG00008002
AMCG00008011 mRNA downstream 12621 39568443 ~ 39570932 (+) True AMCG00008011
AMCG00008007 mRNA downstream 15483 39571305 ~ 39581282 (+) False AMCG00008007
AMCG00008022 mRNA downstream 229002 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008021 mRNA downstream 241513 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008020 mRNA downstream 261205 39817027 ~ 39834952 (+) True AMCG00008020
TU34851 other upstream 45699 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 841161 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1113481 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1137147 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1380015 38168570 ~ 38170061 (+) False AMCG00007952
TU34945 other downstream 276567 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 500810 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 685490 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2437037 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3549891 43105713 ~ 43108242 (+) True G28636

Expression Profile