RNA id: AMCG00008012


Basic Information

Item Value
RNA id AMCG00008012
length 519
RNA type mRNA
GC content 0.70
exon number 1
gene id AMCG00008012
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39512273 ~ 39512791 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCATACTGACGTGCTCTGAGCTGGGGtctgaggagagggagaaggcgGAGCGGCTGTGGGTGCTCTTCCTGTCCGGGATCGACTTCTTCCTGCAGGAGCTACACAAGATCGCCGCCCTGCAGGCGCTGTTCCCCCTGGCCCAGCAACGTGACCACCGGGCCCTGGTCAGCACCGGGGCGGTGGGCCGGGGGGTGGAGGTGGCTGCCCGGGCGGCGACGGCACAGTTGCCCTGGGCGGAGGGGGCGGGCGAGGAGCCCCCGGACCTGCGGGTCCACATCGCCCAGCTGGAGATCATGGCCCAGGAGATGGTGCAGCGGGTCAATGTGCCCATCTGGTCAGTGGAGCCCATGCAGGAGGCCTGGGGAGAGGGCAGCGGGGGcgagctggagctggaggacAGGGTGACGTCCGAGGAGCTGCTGACCGTAGAGGAGCTGCCACAGGGGGAGCACCGCACCGGCTGCTGCCACGCCCGAGGCTGCCGGTGGGGTGGGGCCCTCTGCCTGGTGACCTGA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34781 lncRNA upstream 221052 39290968 ~ 39291221 (+) True G27788
TU34770 lncRNA upstream 245600 39266422 ~ 39266673 (+) True G27781
TU34734 lncRNA upstream 303980 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 303980 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 452539 39059531 ~ 39059734 (+) True G27709
TU34891 lncRNA downstream 27591 39540382 ~ 39541917 (+) False AMCG00008010
TU34873 lncRNA downstream 67988 39580779 ~ 39592411 (+) True AMCG00008007
TU34902 lncRNA downstream 91821 39604612 ~ 39604828 (+) True G27881
TU35006 lncRNA downstream 445196 39957987 ~ 40003700 (+) True G27960
TU35021 lncRNA downstream 539099 40051890 ~ 40060205 (+) True G27973
AMCG00008013 mRNA upstream 401 39509459 ~ 39511872 (+) True AMCG00008013
AMCG00008008 mRNA upstream 9254 39494845 ~ 39503019 (+) True AMCG00008008
AMCG00008002 mRNA upstream 29940 39472816 ~ 39482333 (+) True AMCG00008002
AMCG00008003 mRNA upstream 48971 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008005 mRNA upstream 56699 39446070 ~ 39455574 (+) True AMCG00008005
AMCG00008010 mRNA downstream 27429 39540220 ~ 39545607 (+) True AMCG00008010
AMCG00008009 mRNA downstream 37285 39550076 ~ 39555822 (+) True AMCG00008009
AMCG00008011 mRNA downstream 55652 39568443 ~ 39570932 (+) True AMCG00008011
AMCG00008007 mRNA downstream 58514 39571305 ~ 39581282 (+) False AMCG00008007
AMCG00008022 mRNA downstream 272033 39784824 ~ 39790664 (+) True AMCG00008022
TU34851 other upstream 7896 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 803358 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1075678 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1099344 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1342212 38168570 ~ 38170061 (+) False AMCG00007952
TU34945 other downstream 319598 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 543841 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 728521 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2480068 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3592922 43105713 ~ 43108242 (+) True G28636

Expression Profile