RNA id: AMCG00008015


Basic Information

Item Value
RNA id AMCG00008015
length 3908
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00008015
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39482586 ~ 39489763 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAGTTTGGGGCGGCCGGCGTCAGAGGTCGCTCCGGCGTGACGCGATGACGTAGCGCCTGTAGTGAATGTTTTTGACCGGCGGCGACGTCGGCCTgtccagggagagagagaccgagagggGATGTCAGCGTCGCACTGCTGTTCATACTGACAGGCGAGCAGTTGGCCTGCGGGACAGCGTGGGTTCAGATGTAGTGTCGCCATTATTTGGTTTCCTAATGTCAGTGCAAAACGCAGGCGGCGGGGAGAGAGTTTCGCGACGCGGCCCGCGATGAGCCGAGCCACAGGAAGATGGATGTGAAAAAAGCCCCCGGTGTCGGCGCCTCTTCCCCCTTAAATGGGATCGGCAGGCAAGGAGAGAGTGGCAACACCGCTGGGTGCACTGTGCCAGAGCCGCAGCCCTGCTGCTGTGGAAATGTCGCTGTGCCACACGTCCCGATAGCGGGGGCCCTGGCCGATTTTGATCCGAAGCGGAAGAGGAAGGTGCTGGAGATCTCCCAGGCGCTGAGCGCGAGTCCGGTGGACGTGGCCGTGCTGCGCAGGATGGCCATCGGCGAGGGGGGGCTGCTGACGGACGAGATCCGCTGCAAAGTCTGGCCCAAACTGCTGAACGTGCAGACCGACCGGCTGCCCGAGAAGCCAGGTGAGGCGCTGCGTGAAAACAACAAGGATTACCATCAGGTCCTGCTGGATGTGCGGCGCTCGCTGCGGAGGTTCCCCCCCGAGCTGGCGCTGACCTCCCCCCCGCCCGTGCTGTGCGCAGGGATGCCGGACGAGCAGCGTGAGGGGCTGCAGGAGGAGCTCATCAACATCATCCTGCAGGTGCTGCACAACAACCCGCAGCTGCACTACTACCAGGGCTACCATGACATCGTGGTCACCTTCCTGCTGGTTCTGGGAGAGCAGCTGGCCACCGCACTGGTGGAGAAGCTCTCCACCCACCATCTCAGGGATTTCATGGACCCCACCAtggacaacacaaaacacattctgaacTATCTGATGCCCATCATAGAGAGAGTCAATCCAGAGGTGCACGATTTCATGCAGAGGGCAGAGGTGGGCACCATTTTCGCCCTCAGCTGGCTCATCACCTGGTTTGGCCATGTGCTGTCAGACTTCCGCCATGTGGTGCGGTTGTACGATTTCTTCCTGGCCTGCCACCCCCTGATGCCCATCTACTTTGCTGCTGTGATCGTGCTGCACCGCGAGGAGGAGGTGCTGGAGTGCGAGTGTGACATGGCCTCGGTGCACCACCTCCTGTCCCAGATCCCGCAGGACCTGCCGTACGAGCTGCTGATCAGCCGTGCCGGGGACCTGTTCGTGCAGTTCCCGCCCTCGGAGCTTGCCCGAGAGGCCACGcagcagcacagccagcaGACAGCCGCCTCCACGTTCAAGGACTTCGAGCTGGTCTCGGCGCAGCAACGGCCCGACGCGGTGCTCCGGAGGCGGCGGCGGGAGCAGGCGAGGGCGGCGGCGACGGCGGTGGTGAAGAGCAACGCCGTGGCGGTCCAGCCGCGGGCCAAGCGCTTCGTCAGGCTGGCTGTGATGGGACTGACCGTGGCTCTAGGGGCGGCCGCGCTGGCTGTCGTGAACACTGCGCTGGAGTGGGCGCCCAAAATCGACCTGCAGCTTTTCCCCTGAGCCCTGGAAAGCACCATAGAGGAGAGAAgggtggaaaaaatgaaaaggaaggatgttattttttttttcttttgtggctTAGACACTTTAAATAGAAAAAGTACCAGGTTTCTTGGGGGAAGATGGaaacctaaatatatatattttcttttcggcggtaaaaacaaatcttgacCCCaggacattttttcttttttttttttttttatgtttaattaagaaaataatgatcaTGTCCACCACACAGATCAATTAAAGATGTGGTGTGCgggttttaaatataaaaagctgGTGGCTCTCTTTAAGATCTGGCAATTGGTTGAAGGAGCTGCCAGCAGGATAAGGGGCCCTGCTGGCTATAGAAGAGCCCATCCTCTTAGTCTAAATGGGGGCCGGGGGCGTGCTCTGCAGTAGCTATCCTGTACAGAGGATTAATTGCCAGTTTGCGCTATGTGGTTCGGGCACGGGGGGGCGTGTCGGTCCCAGTGGCTCAGACCCGGGTTCTGCCTGACCGCGTGACGGTATCAGGACAGAGCACAGCTGGACTCTCTCCTCTACTGAAATGAAGTTCTTCCGTCTGCACTGACAGCGCCTGCCTCTCCTGGGTCCCTGTGCCTTTCCGGAGAAGTGTGGATTTTGCACTCTGGAGCAGCAGTGATATTTAGCCAAGCAAACTAATGCCAACTACATTATTGAACTCCTATTATCTCCCTGAGCTTTCTACACACTGAGAccaaatgaatacatgaataaagtaaatatttgtatatttagcCAATAAGGTTTATTTTGCagaaaggtttttgttttattttcatttgctctTTGCACTcatccaacccccccaccaccaaaaacacctccctctccctcggtctcatgcattattaaagttcgttttatgtttttttttttttaattgcacttaTTTTGGTTATATAATGATTTCAAAACAGAGCCAAGCATTAAGATATAGATCGTTCCTTTTACACTAATGGCCTGTGTTTCCACAGCACTTCTGCCTTTTTGAGTAAGTGGTCTCAGGGCACTTAAGGGACTTTCCATTGCCCCCCCCCACGCCCATCACAGATTCTCAGCCCTCAGTCCAGTACAGTCGCTCTCCTGGGCTTGCTGGGCTGCGTTCTGCACCGGACGCATTGCCCCCTGCTGCTGCAAGTGCACCATGggtaaagtaaaacaaacccGTTTTTGTTTCGGTTCAACAGATTCTCCCTACGGTTACATTGAAGGCCATGGCGATCTGCTAATTTCGCTGGCCTGGTTATGACTGACATAAATTATACCATGTAGGTGTATGTATATTATGAAAAGGGTAGGTGCTCGGTGTACAGTAGAGGTCGAGTTGAGTCACTATGTCCGTGATTCCAAAAGGAGTCTATGATGTAAACGTGGattgtgtttctcatttctccgtgtgtgtgtgctgttacAACAGAAACTAAGACTGGGCAGAGGATTAATCTACCTCTAAAAGAGTATTTcagaaaaagagacaaaaaaagtGTCAACCTTTTCACAGCACTAACCTACTAAAAATAACTGATTCTCTGGATCATGGAGGCCGTGTCATGGCAGGGCAGTGTCTGAAACCAGCAGGTGGCCAATTCTTCGAGGCTACTTCATACTTGACCTTTGGTTTGGACTGCAGCGGGTTGTGCTGCAGGGTTTACCCCAAGACAGCCGACGCTACACATCCGCCATATCCTTCACCAGGCGTGGCCCTTGGCAGTATTTCCTATGGAAGTTAGTTTAGGTTCTCCTCTGGTTCAGTGATGTTTAACAGTGGATTCATATCAATTTACTACTACAATTATAGAGCACGTACTGTTAACACTCACTTACTCAAGGCTGCTTTTTGCTTGGCAGTGATTTTTACAGGGAAAAAGAAAACGATTTTAAATAGtacttccacacacacacacacacacacacacactttctctttctctctctctctcacacacactagAAAAAAGTTGTTTTACGGTGTCCCAGACTGACACTCCCGTGTCTCTGAACCGTGATTTGTGACTAATCAAGGGACCTTTGTAAATCTAATCTGTCATCTTCTCTTTCTGATATTTTGCTCTTCCgtgaaaatcacattaaaaaccaCTAAAATAAACCGTACAGAAAGGGgcttattttctttgtacatgGATTACGTCACACCCAGAGCCAGCATTTCCAGGCTGGGCTGGGGGGTGTGGGTGGGGCAGATCAGTTCTATGAAGAAAC

Function

GO:      GO:0005097,GO:0032851

KEGG:

id description
K20372 TBC1D20, GYP8; TBC1 domain family member 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34831 lncRNA downstream 26728 39455040 ~ 39455858 (-) True G27833
TU34645 lncRNA downstream 555015 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 559898 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 574775 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 626809 38855548 ~ 38855777 (-) True G27668
TU34927 lncRNA upstream 274167 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 300783 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 352568 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 352568 39842331 ~ 39847044 (-) False G27949
TU35107 lncRNA upstream 778509 40268272 ~ 40273788 (-) True AMCG00008042
AMCG00008006 mRNA downstream 10194 39465571 ~ 39472392 (-) True AMCG00008006
AMCG00008000 mRNA downstream 175807 39300644 ~ 39306779 (-) True AMCG00008000
AMCG00007999 mRNA downstream 192588 39269967 ~ 39289998 (-) True AMCG00007999
AMCG00007996 mRNA downstream 224356 39240447 ~ 39258230 (-) True AMCG00007996
AMCG00007995 mRNA downstream 246104 39221082 ~ 39236482 (-) True AMCG00007995
AMCG00008018 mRNA upstream 23703 39513466 ~ 39517267 (-) True AMCG00008018
AMCG00008017 mRNA upstream 28681 39518444 ~ 39525326 (-) True AMCG00008017
AMCG00008014 mRNA upstream 38626 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008016 mRNA upstream 67813 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008019 mRNA upstream 102569 39592332 ~ 39628102 (-) True AMCG00008019
TU34691 other downstream 390831 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 426907 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 432989 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1318044 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 1390708 38085929 ~ 38091878 (-) True G27502
TU34865 other upstream 10558 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 1526396 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1709726 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2357170 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3271241 42761004 ~ 42764654 (-) True G28581

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028550 True 3167 mRNA 0.40 8 NC_007130.7 1329539 ~ 1363759 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_08144020_08149228.mRNA True 1329 mRNA 0.53 8 CI01000030 8143888 ~ 8149228 (-)