RNA id: AMCG00008017


Basic Information

Item Value
RNA id AMCG00008017
length 3032
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00008017
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39518444 ~ 39525326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGTGACGTCGCACTGACGCAAGCGTGCGCGGGGCGTAGCGGCAGAATTCGCGGAAGTGGCGAGCGCATCCTGTTTGCCGTGGGAGACAGTAGCAGTGCGCACTAAAATCATATTCTGTGACTCATAAAGACACTCGGAGGTGTAGGTTATTGCATTGCACGCCTAAACGGAGACATACAGAACAACACAAGCAGGACTTCCTGAACCCGTGCCACAAGGGAGAGACAACGCAAGAGGTCTGTGGTACGACATGCAGTGAACCTTCCGTCTGGCGTCTGAACCGCTGTTTGTGTGCATGCGATCTTGAGGGATAGAGTAGCGCACGGGTCTCCGGAGCAAGAAAGGAAATCAAGACGAGTCGTCGGAGTCTCTCGACGGGCGAGATGGGCGCTCACCGAAGCGAGGGGCGGAGGGAATGGCTGCAGCAGGACCCGGCGGAGCAACCGGCTCCCGTGAACCCCTGGAACATCATGATCAAACACAGGCAGGTCCATCGCAGAGGCCGGCGCTCGCAGATGACAGTCAGTTACACCGACCCCGTGCTCTCCATGGACCTGCTGCGTGCCGTGCTGCAGCCCAGCTTCAACGACGACATCCTGGCCGTCTTCAACAAGTACATGAAGTTCTTCCAGAAGGCAGCGAGTAACGTGAGGGAGAACGTGGGCGACGATGTGCAGATGGAGCAGCTGATCCGGGAGGCCTGTCGCAACTGCCTGGAGCAGGCCAAGCAGCTGTTCTCGGATGGGGAGAAGACCGTCCCAAGGACAACGCTGGACCAGCCAGCCACCAAGCGGGGAAGACAGATGGAGGACGAATCTGTGCACAGAGGCAGCCCTGTTTCTAAAAAGCGGAAGGGACGTCCCCCTGGTTCTGTCATTCAGTATGACCGACCTGTGTCCAGTGTCCAGTCCAAAATGAAGCCGTCGGAGCCCATAAAACGCGAGGGCCCAAAGTGGGACCCCTCCAGGCTGAATGAAAGCAGTACCTTTGTCCTGGGCTCTCGGGCCAACAAAGCTCTGGGGATGGGCGGCACCCGGGGGAGGATTTACATCAAACACGCGGACCTCTTCAAGtACGCGGCAGACCCCCAGGATAAGCACTGGCTGGCTGAGAGACAACACATGAGAGCAACAGGAGGAAAGATGGCATATCTCCTTATAGAAGAGGACGTGCAGGACCTGGCCCAGAGCGAGGACTACAGAGACTCCCCTGAGCTGAAACTGGACGAGCTGAAGCCCTTCGCCGTGCCGTCCTGGATGATCGAGAAGATGCAGAAGGCCATGGAGGTGCAGCGCTCCGAGAGGGAGTAGGACAGCAGGGGGAGCAGGGGCTAGCGGCTGCACGGAGGGGCTCTCCCTGAATTCCTCAGACCGGGAGGTGGGGAGGAGCGCTCTTCACACCAGCCTAGACTTGCCTCTCACAGATGAGCCTCTGCCTGCCCACTGAGACTGACGCCAAAAACTCAATTccaagctttctttttttttggttgacattttgtttcttgcGTTTCCTGTCTGTCTGAAGATTCACGGGCCCCGACCACATTACAAACCTCCTGACTATGCAGGGAAAAGTCCTATATACTGCCACATGCTGGTTGAATGGGTTGGTAGTCGCTCGGTACGTTAACGCACAGTTCTGCGCTGGCTTCTTGTGCTTGCTTTTATTCTCAGACTCGTGGATGGCCAGCCAGTGAGATGTCGCAGTGTGACCTGATAATAGTTACAAATTGAAGGCAGTTAATGTGAACATCATGTTAATAACATGTAAAAGGAGGAGATGGAAAATTCTGCTGTTCAAATCTTTCCCCCCCCTTTGTTTGAATAGCTGTCTTCGCTGTGGTGATCCTTCTGTGAATGTAAACCGTGTTTACATTTTGCCTGGCCATCCCTTCCTTCACGTAAGAGAGACTGACACCCTGttgtgtttcctgtttgtttgtttttcccatttagGAATAACTGTAACTGATGACAGCCAACTGATGATCTGGGGCAATACGCCTTGGTCGATCATCTACATTTACAGTTACAGCTTTCGGTTACTTCACTGCTGTAAATTACTACTTGTGTTAGGTTTAATGCTTCTCTGATCTGAAAAGAGTTCATAATTCAGAGAGATCTTTAAAATCCAGCGGTTTCTGGATCTCAGCCTGTCACTTTCCCATCCTACTCTGTGTCATTTTCCTCAAGGGGAAAACTAACCGGtactacaaaagaaaaagaagactTACAGTAATTCAATGCCtgagaattgtttttatttttaaatgagagaaataGGATCAAACTTGTATGTTCCTAAACCcggtgtgtttttattttatgtgtattatgGAGATATGATTCAAGCAATGTATGATCACCTGGTATATCATCTAAGGTGGAATCCCACAGCATAACACCCACAGTACACAAATCTATACACAATCCCACAGGGATACATAATTTGCTTCAGGAAAGTGTGATTTAGGTAGGgttaacattaaacataatatcCAATCCTATTtaacactgctttatttttgcaGTGCTGGCCTTGAAAATAGGTATACTTATAAATCATTTTAGTGGGTGTGATCACTATTTAAATGATATACCTTTATtgtgggatttatttttgttttcttgtgggATATTGTTTGAAATAGGACCACCTGCTAGGAAGACATTTTcaaccagttttatttttatatatacatatatttatgtcaTCATTTTTTTGTAGTCAGATTTTAGacttggttttatgttttttgataACGCTGTTAAAACGCCCAGTTACTGAACCCTCAAAGTCATGAGCATCGAGAAGGCTctgaaaacatgttattttaagCAGTGGAAGAATTACTTTCTAAATTCCTGACatgtattgaaatacataatgCAACTTGATTTGATCCTGTACATATTAGTAacagtattttacaataaagtgtgtttgtttaggttgtgtgttgttattttacattgaaGTTGTTTATTAAGGCAGTGTCAGATCATTTTGGATCCGAGTACTTTTTCC

Function

GO: NA

KEGG:

id description
K08707 DNTTIP1; deoxynucleotidyltransferase terminal-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34831 lncRNA downstream 62586 39455040 ~ 39455858 (-) True G27833
TU34645 lncRNA downstream 590873 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 595756 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 610633 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 662667 38855548 ~ 38855777 (-) True G27668
TU34927 lncRNA upstream 238604 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 265220 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 317005 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 317005 39842331 ~ 39847044 (-) False G27949
TU35107 lncRNA upstream 742946 40268272 ~ 40273788 (-) True AMCG00008042
AMCG00008018 mRNA downstream 1177 39513466 ~ 39517267 (-) True AMCG00008018
AMCG00008015 mRNA downstream 28681 39482586 ~ 39489763 (-) True AMCG00008015
AMCG00008006 mRNA downstream 46052 39465571 ~ 39472392 (-) True AMCG00008006
AMCG00008000 mRNA downstream 211665 39300644 ~ 39306779 (-) True AMCG00008000
AMCG00007999 mRNA downstream 228446 39269967 ~ 39289998 (-) True AMCG00007999
AMCG00008014 mRNA upstream 3063 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008016 mRNA upstream 32250 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008019 mRNA upstream 67006 39592332 ~ 39628102 (-) True AMCG00008019
AMCG00008025 mRNA upstream 404205 39929531 ~ 39945352 (-) True AMCG00008025
AMCG00008026 mRNA upstream 456286 39981612 ~ 39984433 (-) True AMCG00008026
TU34865 other downstream 13852 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 426689 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 462765 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 468847 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1353902 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 1490833 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1674163 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2321607 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3235678 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4892548 44417874 ~ 44418196 (-) True G28970

Expression Profile