RNA id: AMCG00008018


Basic Information

Item Value
RNA id AMCG00008018
length 1286
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00008018
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39513466 ~ 39517267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTGATTGGCCCGCGGGAGGCCAGTGTGGGCGGCGATTGGTTAAACAGGACGATCTGTGGGCGGTGATTGGCTGAATGGAAACGGATTTCAAAAAATTTGAACTGAGGGGCGGGATAAAGGTTGAAATCGGGCCTTCGGCCGGAATCTGAATGACAGAATAACACAGGCGAGCCGGCGAGCGCAGCGCAGCCCGCAACACTGGTTTTGGTTTGTTAGTCTCCTTTCCAACCGCCAGACGACCGTtgatttttttatctttgtggAAGAGTTTACTAGAAACCAAACCCAACCCAAATCATGGCTTCTCAGAATATGGACCCGGCAGCTGCGACCCCCGCCGCCGCTCTGAAAGGCAGCGAGTCCGGCGGCAGCGCAGCCAAGGGCTCGGTGTCCAAACGATTGCAACAGGAGTTGATGACCCTAATGATGTCTGGGGACAAGGGCATCTCTGCTTTCCCAGAGTCGGACAATCTCTTTAAGTGGATCGGCACCATAGACGGCGCTCAGGGAACGGTGTATGAAGGGCTGAGGTACAAGCTCTCCATGGAGTTCCCCAGCGGCTACCCCTACCAGGCGCCCCGTGTGAAGTTCATCACGCCCTGCTACCACCCCAATGTGGACGAGCAGGGCTTCATCTGCCTGGACATCCTGAAGGAGAAGTGGTCGGCGCTGTACGACGTGCGCTCCATACTGCTGTCTATCCAGAGTCTGCTAGGAGAACCCAATAACGAGAGCCCCATGAACACCGGCGCAGCCGAGCTGTGGGCAAACCAAGAAGCTTACAAGACCCATTTGCACGCGACCTACAAGAACTGACCCCTGGGATTCGCCCTGCCCCGTCTTCTGTGCGTCTCATTTTTCAATGTCTTTTACTGTCTCCACTTTCTcacaattatgtaaattatcAGTGTCgatttaatatactttttgtctttatttttattaacttaTGTGAATAAAGAGATTTCTTGTAAAGTGCATTTAAGCTGTGCTCATTATATAGATTCTGTTCATGGAGAATCGTGCACTTAGCAGAATGGTGTGgttaattgaaatgcattattacCAGAGCCCTCTGTGTGCATGTGGTTTTGGACATGGAATAAATTGAGTTGCCTTTGTTACCTTTTGTACATGAGTGCTTCAGTTCTCTAAACTAAACTGGACCTTACTGGTGTGACGTGGGCAGCAGCATCTGCACTGAAGGGTTGGATGGGGGGGGTCTCCAACTCAATTCCTGTGTATGTGTTCATAGGTGTTTAAACTtatctagctaattaaac

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06688 UBE2C, UBC11; ubiquitin-conjugating enzyme E2 C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34831 lncRNA downstream 57608 39455040 ~ 39455858 (-) True G27833
TU34645 lncRNA downstream 585895 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 590778 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 605655 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 657689 38855548 ~ 38855777 (-) True G27668
TU34927 lncRNA upstream 246663 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 273279 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 325064 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 325064 39842331 ~ 39847044 (-) False G27949
TU35107 lncRNA upstream 751005 40268272 ~ 40273788 (-) True AMCG00008042
AMCG00008015 mRNA downstream 23703 39482586 ~ 39489763 (-) True AMCG00008015
AMCG00008006 mRNA downstream 41074 39465571 ~ 39472392 (-) True AMCG00008006
AMCG00008000 mRNA downstream 206687 39300644 ~ 39306779 (-) True AMCG00008000
AMCG00007999 mRNA downstream 223468 39269967 ~ 39289998 (-) True AMCG00007999
AMCG00007996 mRNA downstream 255236 39240447 ~ 39258230 (-) True AMCG00007996
AMCG00008017 mRNA upstream 1177 39518444 ~ 39525326 (-) True AMCG00008017
AMCG00008014 mRNA upstream 11122 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008016 mRNA upstream 40309 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008019 mRNA upstream 75065 39592332 ~ 39628102 (-) True AMCG00008019
AMCG00008025 mRNA upstream 412264 39929531 ~ 39945352 (-) True AMCG00008025
TU34865 other downstream 8874 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 421711 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 457787 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 463869 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1348924 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 1498892 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1682222 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2329666 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3243737 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4900607 44417874 ~ 44418196 (-) True G28970

Expression Profile