RNA id: AMCG00008019


Basic Information

Item Value
RNA id AMCG00008019
length 3039
RNA type mRNA
GC content 0.59
exon number 24
gene id AMCG00008019
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39592332 ~ 39628102 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGTCACAGATCAGACCTCCACAATACCAGCTCCCCGAGGGCAGGCTGGAGGGGTCCTGGGGAAAGAAAAGAGCCAGCTAGGCCATGGCTTGCTCTTCGGCGATGGCAACCCCAAGGAGAGTAGCCCTTTCATCAACAGCAGTGACGTGGAGAAGAACCAGCAGTACGATGGCAAGAACATGGCTCTGTTTGAGgaaGAGATGGACACCAGCCCCATGGTCTCCTCCTTGCTCAGCAGTCTGGCCAACTACTCCAACCTCCCACAGGGAAGCAAGGAGCACGAGGAGGCCGAGAACAACGAGGAGCAACGCAAGAAGCCTGTCAAGGCTCCACGGATGGGCACGTTCATGGGCGTTTACCTGCCCTGCCTGCAGAACATCTTCGGTGTGATCCTTTTCCTGCGACTGACCTGGGTGGTGGGCGCCGGTGGGGTGCTGGAGTCCTTCATCATCGTCTTCATGTGCTGCGCCTGCaCCATGCTGACCGCCATCTCGATGAGTGCCATCGCTACCAATGGAGTGGTGCCAGCGGGGGGATCTTACTACATGATCTCACGATCCCTGGGGCCAGAGTTTGGGGGCGCCGTGGGACTGTGTTTCTACCTAGGGACCACTTTCGCTGGGGCCATGTACATCCTGGGGTGTATCGAGATCCTGCTGACCTACATTGTCCCCCAGGCTGCTATATTTAAGATGGAGGGTCTGGATGGGACAGATGCAGAGGCTGCCCTGCTCAACAACATGCGTGTGTATGGGACATGCGTCCTATCCCTCATGGCGTTGGTGGTGTTTGTGGGGGTGAAGTATGTCAACAAGCTGGCCCTGCTCTTCCTGGCCTGCGTCATCCTCTCCATCATCGCTGTCTATGCCGGCGTCATCAAGACCGCCTTTGACCCACCTGACTTCCCGGTCTGCATCCTGGGCAACCGCACCCTAATCTGGAAAGGCTTTGACTTGTGCGCCAAGGTGGTCGAGCGAGACAACGGCACCTTCACCACCAAGTTGTGGCGCATGTTCTGCGACTCAGACCAGCTCAACGCCACCTGTGACGAGTACTTTGTCAACAACAATGTCACCGAAATCCAGGGCATCCCCGGGGTGGCCAGCGGCATCCTGGCCGTCAGCGATGACTCCCCAGTCACCAGTAGCAACCGATATGTCTTGGCTGACATGACCAGCTTCTTCACACTGTTGGTCGGGATCTACTTCCCCTCTGTAACAGGAATCATGGCCGGATCCAATCGCTCCGGGGATCTGCGCGATGCCCAGAAGTCCATCCCTATCGGCACCATAATGGCCATCTCTACCACCTCCTTTGTGTGTATCCTTTCCCTGCACTGCCTGTCCACTCTGGTATTCGGTCACGGCAAGGCAAACGGGGAGCCCACCTGGGCGCTGCTCCTGACCGCCTGCATCTGCGAGATCGGCATCCTGATCGCCTCTCTGGACGCCGTCGCCCCCATCCTGTCTATGTTCTTCCTGATGTGCTACATGTTTGTCAACCTGGCCTGCGCCTTGCAGACTCTCCTCCGCACTCCCAACTGGAGACCTCGCTTCAAATTCTACCACTGGGCCCTGTCCTTCCTGGGCATGAGCTTGTGTCTGTCGCTGATGTTCATCTGCTCCTGGTACTATGCCATCGTTGCCATGGTGATCGCCAGCTGCATCTACAAGTACATTGAGTACCGCGGGGCAGAGAAGGAGTGGGGTGATGGGATCCGTGGCCTGTCCCTCAGCGCGGCTCGCTACGCACTCATGCGACTGGAAGAAGGGCCCCCCCACACCAAGAACTGGAGGCCCCAGCTGCTGGTGGTAGTGAATGTGGATCAGGACCAGAACGTGGAGCACCCCCAGCTCCTGTCCCTGACCAACCAGCTGAAAGCAGGCAAAGGACTGACCATCGTGGGCACAGCACTCGTGGGCACCTTCCTGGAAAACCACCCCCAGGCCCAGCGCGCAGAGCAGGcaggggggctgggggggctgcAGCATAACACGGTGCTCGTCAGCTGGCCGCGCAACTGGAAACAGGCCGAGGATCACCAGACCTGGAGGAATTTCATTGAGCTGGTCCGTGAGACCACAGCTGGTCACCTGGCCCTGCTGGTGCCCAAGAACATCACCGCCTATCCCTCGAACCAGGAGCGCTTCACTGAGGGCTTCATCGACGTCTGGTGGATCGTCCATGATGGCGGGATGCTCATGCTGCTTCCCTTCCTCCTCCGACAGCACAAGGTGTGGAGGAAGTGCAAGATGCGCATTTTCACTGTGGCCCAGATGGACGACAACAGCATCCAGATGAAGAAAGACCTGACCACCTTCCTGTACCACCTCCGTATTGATGCTGAAGTTGAAGTGGTGGAGATGCACGACAGCGATATTTCGGCCTACACCTACGAGAAGACCCTGGTGATGGAGCAGCGGTCACAGATCCTCAAACAGATGCACCTGACCAAGAACGAGCGTGAGAGAGAGATTCAGAGTATTACCGACGAATCCCGCGGCTCCATCCGCCGCAAGCACCCAGCCAACGCCCGCACACACCTGAGCGTCACCGAGGAGCAGCCAGGGGGCAGCGAGGAGGAGAAACCAGAGGAGGAGGTACAGCTGATCCACGACAAGAACGCCACCCCGACCCCGGCCAGCCCCCAGACCCCTGCCGAGGAGGTCCAGACCCCCGGCGAGAAGGTGCACATGACCTGGACGGACAAGGCCAAGGCCACAGCTGCCAGCACTCCAGAGGGCATCAAGGACATCTTCAACATGAAGCCGAACCAGTCCAACGTGAGGCGCATGCACACCGCTCTGAGGCTGAACGAGGTCATAATTAAGAAGTCCCAGGAGGCCAAGCTGGTGCTGCTTAACATGCCTGGGCCGCCCAAGAACAGAAAGGGCGACGAGAACTCCTGCAAAGTGCTGGCCCTTAactcctcctctcccccagaCATGGAGTTCCTGGAGGTCCTGACCGAAGGCCTCAATCGGGTCCTCCTCGTGCGTGGTGGCGGCCGTGAGGTCATCACCATCTACTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34831 lncRNA downstream 136474 39455040 ~ 39455858 (-) True G27833
TU34645 lncRNA downstream 664761 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 669644 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 684521 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 736555 38855548 ~ 38855777 (-) True G27668
TU34927 lncRNA upstream 135828 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 162444 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 214229 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 214229 39842331 ~ 39847044 (-) False G27949
TU35107 lncRNA upstream 640170 40268272 ~ 40273788 (-) True AMCG00008042
AMCG00008016 mRNA downstream 25778 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008014 mRNA downstream 50386 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008017 mRNA downstream 67006 39518444 ~ 39525326 (-) True AMCG00008017
AMCG00008018 mRNA downstream 75065 39513466 ~ 39517267 (-) True AMCG00008018
AMCG00008015 mRNA downstream 102569 39482586 ~ 39489763 (-) True AMCG00008015
AMCG00008025 mRNA upstream 301429 39929531 ~ 39945352 (-) True AMCG00008025
AMCG00008026 mRNA upstream 353510 39981612 ~ 39984433 (-) True AMCG00008026
AMCG00008029 mRNA upstream 358826 39986928 ~ 40008602 (-) True AMCG00008029
AMCG00008028 mRNA upstream 422927 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008032 mRNA upstream 449406 40077508 ~ 40091201 (-) True AMCG00008032
TU34865 other downstream 87740 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 500577 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 536653 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 542735 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1427790 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 1388057 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1571387 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2218831 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 3132902 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4789772 44417874 ~ 44418196 (-) True G28970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064541 True 3863 mRNA 0.52 25 NC_007117.7 55449300 ~ 55585423 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_17146962_17186247.mRNA True 3789 mRNA 0.51 21 CI01000340 17146445 ~ 17186492 (-)