RNA id: AMCG00008020


Basic Information

Item Value
RNA id AMCG00008020
length 2699
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00008020
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39817027 ~ 39834952 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGGAGAGCAGCCGGGAGTTGAAGCGGCAGGAGGCGCACGCTGGGCGGAGCGGCTGGGCTGCGGACTCGCACACCGCTTTtcacaggaaagaaagaaagaataacacGGGCAAACTATACAAGTTAATGTACTATTGAAACCAGGctacctgagagagagagatgggcgACCTGAGCGAGGAGGCGATGCTGGACTACATTTCCGCGGCGGGAGGCAGGGTCCGAAACTCGGACTTGGTGAGAAGTTACCAGCACCTGATCAACCACAGCGAGCAGGAGAGCCGCGCCAAGTACCGAGACGAGTTCAAGGTTATCGTAGATAAAATCGCCCTGGTGAAGACTGAGAACGGTGAGAAGTACCTGGTGCTGAAGAAGAAGTACAAGCAGCTGATGCAGGAGCGAcagagggagcgggagaggcagagggaggtgATGTCTGCAGGGGCCAAGCAGGCCAGTGTGCCCAGGCCCACAGCGCTGGTGCAGTGGGAGGGCGGCGGGGTCATCTGTGCCAACCCCAGCTgggaccccccacccccggcctGCGCCTCTCTGGGGGAGAACGCAGTGGACTCTGTCCCCGGGCCCAGCCAGCAGCCCAAGAAACCCACCCTGGTCTCCTGGTGTGAAGGGCCTGCTATCACACTCACTGAGGACACCACATCCCCTGAGCCTGCAGGGAAGATGGAGCTGCCCTCGATCTTGGTGCAGGACGAGCGCTGCCCCCCGCCGGAGGAGCAGGACGAGGCTCCGCAGCTTCTGCCCCAGGAAGTCGCAGAGGAATCCCCGCCCCTCAGCCACAGAGAGGATGACATCGATCCTGAAACGGGGTCAAAGtCGGGGTCGGAGCAGGATGAGGACGGCGCAGAAAGTGTGGGATCCACTGCTGTCGCTGCCCACCTCAACCAGCTGCTGAAGCAGGAGCCCTCCCTGGCCTACAAGAAGACTGCATTGCACTGGGCTGCCAAACACGGCAAGGAAGATATGGCCACTATGCTGGCCAATGCTGGAGTGGATGTCAACACCAAAGCTGGCTACACCCCCCTCCATATCGCGGCACTACACGGACACCGGCACATCGTAGACCTCCTCGTCAGGACCTACGGAGCCAAGGAGAACCTGCGTGACTACAGCGGCCACCTGGCGTTCCAGTACCTGAACATGGAGGACTCCCGCGAGGAGGGCAGAGGGCTGCaaTTCCCAGTGTCGCAGGGCATTGAGCGCAGGAACCGGAAACTGTCGTCGCTCTTTACGCACAAGAATTCCGGCAGCTCCAAGAAGAAGTGGGGCTCGGTGGAGGACCTGGCAGcggtggaggaggagaagggtgGCCCCCAGCTGCTCCTGCCCCCCACTTTCAGGCCCAGGAAGTTCTCCCGCTGACCTCAGCCAGCACTCCTCCACAGATCCCAGCATGCCCTGGGCCAGGGGGCGGAGTCATTTAATCGGTCGCTGCAGGGCCACACCCCTCGGCCAGCCCTCCTCCGGTACCGGCGCAGCAGGTGTTCCGTCAGGTATGGCTGTGGTCCAGATTTGGGGTCCACCATCAAAAGGACCGGACCGGGCTCTCGACTCCCATTGAAACGGGACGCAACGGCAGAGACACTGTCGTTCCTCTGCGATGCGTCCGAAACGCCACGCAATCACTGCTGATGCAGGCTTGGAGGTCCGGAGTCGATCTTCATCTTGGAGATCTCCCCTCCACGACCACCGGACTTTGGATGTGGCCATTCTCTTATAAGAAGTTAGTCCTTTGTGTTTTCTAGTTGGaatatctgtttttaatatgtatctatgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatatatatatatatatataccacatGTATATACTCGCACACAgagaagtttgtttttttttagatatttttttacattatccTACGCAAAGTTCCCTGTGCGAAGCCAtgtttattatatgtataaCAGTATAAGTATATAGATATTAACAAACTGCAGAGGCTCGTACTGTATTCAGTGCGTCTGCTGTGCACTTTAAACAATGCAGAGGTGACATCCATCCAGGGCTTCGTCACAGCGGCTCTCCTTGCATTCCAGCTGCTTCAAATGTTTTGCTGTGGAAGGAGGGCGATGCAGCTCTTGGTGAAACTAAATGACTTCCCAGACTGCCTTCACATTCCTCTAAATACTGTCTTCTACATTTTCACGccttaatgttttccagaggttttacttttgttattgCGATTTGTTGTATTCGACTAAAAGCACTCAGTGTCTTGaaaaattgtttatatataaaaaaaaagtaaaattgttatattttgatCAGTGTTATTTAATCTAATGTTAATGTCACTTTCAACATAAAATGCGGCACAGAAATGTGAttgagtgtgtgcatgttttaatataaacacatttatatttttgcaatgAGTTGAGAGGTTTTGAAGTGACAAGTATAGTTATTGTTATAGTTATTTTTACTCGTATTACAAACGCAAGGTCATGTACAGCTTGCCGTACTTTCTGTAAGGCAATAACTGATGCTAGCAGCATTAGTGAACAGCCACTGTGCTTAGGACTGCATAGACAAAATACCAAATATTGAATTTACTTCATTACAAATAGAAGTATCCCTTGTGCTGTAATATCAAAATTAAACCACTTTggctttgtgttattgttgtgaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34902 lncRNA upstream 212199 39604612 ~ 39604828 (+) True G27881
TU34870 lncRNA upstream 224616 39510411 ~ 39592411 (+) False AMCG00008007
TU34873 lncRNA upstream 224616 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 275110 39540382 ~ 39541917 (+) False AMCG00008010
TU34781 lncRNA upstream 525806 39290968 ~ 39291221 (+) True G27788
TU35006 lncRNA downstream 123035 39957987 ~ 40003700 (+) True G27960
TU35021 lncRNA downstream 216938 40051890 ~ 40060205 (+) True G27973
TU35105 lncRNA downstream 442462 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 829020 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 916523 40751475 ~ 40755976 (+) True G28140
AMCG00008021 mRNA upstream 7998 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008022 mRNA upstream 26363 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008007 mRNA upstream 235745 39571305 ~ 39581282 (+) False AMCG00008007
AMCG00008011 mRNA upstream 246095 39568443 ~ 39570932 (+) True AMCG00008011
AMCG00008009 mRNA upstream 261205 39550076 ~ 39555822 (+) True AMCG00008009
AMCG00008023 mRNA downstream 8272 39843224 ~ 39848246 (+) True AMCG00008023
AMCG00008024 mRNA downstream 137611 39972563 ~ 39975851 (+) True AMCG00008024
AMCG00008027 mRNA downstream 227769 40062721 ~ 40074110 (+) True AMCG00008027
AMCG00008030 mRNA downstream 240274 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008031 mRNA downstream 266234 40101186 ~ 40114340 (+) True AMCG00008031
TU34851 other upstream 312650 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1108112 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1380432 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1404098 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1646966 38168570 ~ 38170061 (+) False AMCG00007952
TU35023 other downstream 221680 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 406360 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2157907 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3270761 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 3311821 43146773 ~ 43149043 (+) False AMCG00008120

Expression Profile