RNA id: TU34945


Basic Information

Item Value
RNA id TU34945
length 1952
RNA type TUCP
GC content 0.46
exon number 3
gene id AMCG00008020
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39817027 ~ 39834952 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACACCAGACCCATTAAGATTTCACAAAGTTCACTCTGTTGCCTAGACTCAATCCAACCACAAAAAACTGGCAGAGGTTCTGGCCACACTTAGTTTGGGCTTTCCAtcagatttgtatgtattgtattacatttttttttatttatatacacacacacagtgatcGATGGtgattatttatacatgtatttagttGTAATGAGAtttctcgcacacacacacgcctggCGCACTAGGTTAGCGCAGTAACGGATCTCCAGCTGCTGTTTTGTAACCTGTGTATCTGCACCCCCCCTCGGCAGGGCTACACCCCCCTCCATATCGCGGCACTACACGGACACCGGCACATCGTAGACCTCCTCGTCAGGACCTACGGAGCCAAGGAGAACCTGCGTGACTACAGCGGCCACCTGGCGTTCCAGTACCTGAACATGGAGGACTCCCGCGAGGAGGGCAGAGGGCTGCaaTTCCCAGTGTCGCAGGGCATTGAGCGCAGGAACCGGAAACTGTCGTCGCTCTTTACGCACAAGAATTCCGGCAGCTCCAAGAAGAAGTGGGGCTCGGTGGAGGACCTGGCAGcggtggaggaggagaagggtgGCCCCCAGCTGCTCCTGCCCCCCACTTTCAGGCCCAGGAAGTTCTCCCGCTGACCTCAGCCAGCACTCCTCCACAGATCCCAGCATGCCCTGGGCCAGGGGGCGGAGTCATTTAATCGGTCGCTGCAGGGCCACACCCCTCGGCCAGCCCTCCTCCGGTACCGGCGCAGCAGGTGTTCCGTCAGGTATGGCTGTGGTCCAGATTTGGGGTCCACCATCAAAAGGACCGGACCGGGCTCTCGACTCCCATTGAAACGGGACGCAACGGCAGAGACACTGTCGTTCCTCTGCGATGCGTCCGAAACGCCACGCAATCACTGCTGATGCAGGCTTGGAGGTCCGGAGTCGATCTTCATCTTGGAGATCTCCCCTCCACGACCACCGGACTTTGGATGTGGCCATTCTCTTATAAGAAGTTAGTCCTTTGTGTTTTCTAGTTGGaatatctgtttttaatatgtatctatgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatatatatatatatatataccacatGTATATACTCGCACACAgagaagtttgtttttttttagatatttttttacattatccTACGCAAAGTTCCCTGTGCGAAGCCAtgtttattatatgtataaCAGTATAAGTATATAGATATTAACAAACTGCAGAGGCTCGTACTGTATTCAGTGCGTCTGCTGTGCACTTTAAACAATGCAGAGGTGACATCCATCCAGGGCTTCGTCACAGCGGCTCTCCTTGCATTCCAGCTGCTTCAAATGTTTTGCTGTGGAAGGAGGGCGATGCAGCTCTTGGTGAAACTAAATGACTTCCCAGACTGCCTTCACATTCCTCTAAATACTGTCTTCTACATTTTCACGccttaatgttttccagaggttttacttttgttattgCGATTTGTTGTATTCGACTAAAAGCACTCAGTGTCTTGaaaaattgtttatatataaaaaaaaagtaaaattgttatattttgatCAGTGTTATTTAATCTAATGTTAATGTCACTTTCAACATAAAATGCGGCACAGAAATGTGAttgagtgtgtgcatgttttaatataaacacatttatatttttgcaatgAGTTGAGAGGTTTTGAAGTGACAAGTATAGTTATTGTTATAGTTATTTTTACTCGTATTACAAACGCAAGGTCATGTACAGCTTGCCGTACTTTCTGTAAGGCAATAACTGATGCTAGCAGCATTAGTGAACAGCCACTGTGCTTAGGACTGCATAGACAAAATACCAAATATTGAATTTACTTCATTACAAATAGAAGTATCCCTTGTGCTGTAATATCAAAATTAAACCACTTTggctttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34902 lncRNA upstream 227561 39604612 ~ 39604828 (+) True G27881
TU34870 lncRNA upstream 239978 39510411 ~ 39592411 (+) False AMCG00008007
TU34873 lncRNA upstream 239978 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 290472 39540382 ~ 39541917 (+) False AMCG00008010
TU34781 lncRNA upstream 541168 39290968 ~ 39291221 (+) True G27788
TU35006 lncRNA downstream 123051 39957987 ~ 40003700 (+) True G27960
TU35021 lncRNA downstream 216954 40051890 ~ 40060205 (+) True G27973
TU35105 lncRNA downstream 442478 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 829036 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 916539 40751475 ~ 40755976 (+) True G28140
AMCG00008021 mRNA upstream 23360 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008022 mRNA upstream 41725 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008007 mRNA upstream 251107 39571305 ~ 39581282 (+) False AMCG00008007
AMCG00008011 mRNA upstream 261457 39568443 ~ 39570932 (+) True AMCG00008011
AMCG00008009 mRNA upstream 276567 39550076 ~ 39555822 (+) True AMCG00008009
AMCG00008023 mRNA downstream 8288 39843224 ~ 39848246 (+) True AMCG00008023
AMCG00008024 mRNA downstream 137627 39972563 ~ 39975851 (+) True AMCG00008024
AMCG00008027 mRNA downstream 227785 40062721 ~ 40074110 (+) True AMCG00008027
AMCG00008030 mRNA downstream 240290 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008031 mRNA downstream 266250 40101186 ~ 40114340 (+) True AMCG00008031
TU34851 other upstream 328012 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1123474 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1395794 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1419460 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1662328 38168570 ~ 38170061 (+) False AMCG00007952
TU35023 other downstream 221696 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 406376 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2157923 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3270777 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 3311837 43146773 ~ 43149043 (+) False AMCG00008120

Expression Profile